View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_17 (Length: 504)
Name: NF19382_high_17
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 20 - 496
Target Start/End: Complemental strand, 11698727 - 11698251
Alignment:
| Q |
20 |
cgcccgaataaaacttacaccaaagtttggatatcgaccgagacaagctatacaatgattgaaaataagaccaaattcagtttggtagttgaatggaaaa |
119 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11698727 |
cgcccgaataaaacttacactaaagtttggatatcgaccgagacaagctatacaatgattgaaaataagaccaaattcagtttggtagttgaatggaaaa |
11698628 |
T |
|
| Q |
120 |
caaaatgccgtcaaccaccggtttacaatctagttaaattgaaaccttatcaaagtccaactctccattctacttgatcgcctcagcaagnnnnnnntca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11698627 |
caaaatgccgtcaaccaccggtttacaatctagttaaattgaaaccttatcaaagtccaactctccattctacttgatcgcctcagcaagccccccctca |
11698528 |
T |
|
| Q |
220 |
acctcttaggcttaagggacaccataaaacacaactgtttttgcaataacaaacttaccatgatttttacggatgcacataccaattccaaatatgttct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11698527 |
acctcttaggcttaagggacaccataaaacacaactgtttttgcaataacaaacttaccatgatttttacggatgcacataccaattccaaatatgttct |
11698428 |
T |
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| Q |
320 |
ggttagtaaccactgcagcgtccacattgcatttcaacttaccggcatttggtttgcttcatcggggaacttcctcctgcctagactcaccgcggttccc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11698427 |
ggttagtaaccactgcagcgtccacattgcatttcaacttaccggcatttggtttgcttcatcggggaacttcctcctgcctagactcaccgcggttccc |
11698328 |
T |
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| Q |
420 |
tgtcctggactggcagacctgttgccaattatgcaggaaatctcgcgccagcatgaaagacacagccggcctttgct |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11698327 |
tgtcctggactggcagacctgttgccaattatgcaggaaatctcgcgccagcatgaaagacacagccggcctttgct |
11698251 |
T |
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