View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_2 (Length: 684)
Name: NF19382_high_2
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 213 - 666
Target Start/End: Complemental strand, 7077825 - 7077372
Alignment:
| Q |
213 |
gttttgttttacaccaaatcatcataaccatagtcaagttcaaaatgacagaacagtacacaaacccgatatttcaccaactattgtacacataatcttc |
312 |
Q |
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| T |
7077825 |
gttttgttttacaccaaatcatcataaccatagtcaagttcaaaatgacagaacagtacacaaacccgatatttcaccaactattgtacacataatcttc |
7077726 |
T |
|
| Q |
313 |
atgttatattgtacaacaatgagatgagtatttattaaagaaatattagaaggaatattaactcttaacccaactaacatttttgtcataggacctatca |
412 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7077725 |
atgttatattgtacaacaatgagaggagtatttattaaagaaatattagaaggaatatcaactcttaacccaactaacatttttgtcataggacctatca |
7077626 |
T |
|
| Q |
413 |
tcaaaactatgaaataacccttctttctttgctatccaaaagagatcagcacctttaccatcatattggggatcatatgcaatgaatgaagcatgtaaac |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7077625 |
tcaaaactatgaaataacccttctttctttgctatccaaaagagatcagcacctttaccatcatattggggatcatatgcaatgaatgaagcatgtaaac |
7077526 |
T |
|
| Q |
513 |
ctttccattctgcacgacaatgttcagttttgcctataggaaatctccaaacgaagaaataatttggtgctatgtgagtgacaaaaccaccctcactgat |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7077525 |
ctttccattctgcacgacaatgttcagttttgcctataggaaatctccaaacgaagaaataatttggtgctatgtgagtgacaaaaccaccctcactggt |
7077426 |
T |
|
| Q |
613 |
acatgaaagtacaacttcatctgaaataaaattgttgaggcgaatataaatagt |
666 |
Q |
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| T |
7077425 |
acatgaaagtacaacttcatctgaaataaaattgttgaggcgaatataaatagt |
7077372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 8814500 - 8814658
Alignment:
| Q |
7 |
gcagcacagacccagcacagtaccacatcctaaacagaaaattgaaataaagaacaacaaaacagaacaccactgaaagctaagaagatacaacaccaac |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
8814500 |
gcagcaaagacccagcacagtaccacatcctaaacagaaaattgaattaaagaacaacaaaccagaacaccactagaagctaagaagatacaacaccaac |
8814599 |
T |
|
| Q |
107 |
acaaagtgaaagtattagaatcaagccttggactagcatctaactttgaacctgcacaa |
165 |
Q |
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| T |
8814600 |
acaaagtgaaagtcttagaatcaagccttggactagcatctaactttgaacctgcacaa |
8814658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 21964598 - 21964446
Alignment:
| Q |
23 |
acagtaccacatcctaaacagaaaattgaaa-taaagaacaacaaaacagaacaccactgaaagctaagaagatacaacaccaacacaaagtgaaagtat |
121 |
Q |
| |
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|||||||||||| |||||||||||| | ||| ||||||||||||||||| | | || |||||||| |||||||||||||||||||||||||||| | |
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| T |
21964598 |
acagtaccacatgctaaacagaaaactcaaaataaagaacaacaaaaca-----cgattggaagctaaggagatacaacaccaacacaaagtgaaagtct |
21964504 |
T |
|
| Q |
122 |
tagaatcaagccttggactagcatctaactttgaacctgcacaatcaaggttggattc |
179 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |
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|
| T |
21964503 |
tagaatcaagccatggactagcatctaactctgaacctgcacaatcaagcttggattc |
21964446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 23379904 - 23379793
Alignment:
| Q |
42 |
agaaaattgaaataaagaacaacaaaacagaacaccact----gaaagctaagaagatacaacacc-aacacaaagtgaaagtattagaatcaagccttg |
136 |
Q |
| |
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||||||| |||||||||||||||||||| ||||||| | | |||||||| ||| |||||||| ||||||||| || | | |||| |||||||| || |
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| T |
23379904 |
agaaaatctaaataaagaacaacaaaacaaaacaccattggaaggaagctaaggagagacaacaccaaacacaaag-gacattcttagcatcaagccatg |
23379806 |
T |
|
| Q |
137 |
gactagcatctaa |
149 |
Q |
| |
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||||||||||||| |
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| T |
23379805 |
gactagcatctaa |
23379793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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