View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_21 (Length: 468)
Name: NF19382_high_21
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 42638908 - 42639366
Alignment:
| Q |
1 |
atacatgtattatgatatcattttcatgagtccaacattatgatatcatttattcaaatatatataccaagtat----tgtatggctagctagcttagca |
96 |
Q |
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| T |
42638908 |
atacatgtattatgatatcattttcatgagtccaacattatgatatcatttattcaaatatatatactaagtatatattgtatggctagctagcttagca |
42639007 |
T |
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| Q |
97 |
agtaaggttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattca |
196 |
Q |
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| T |
42639008 |
agtaaggttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgtggatgggttagcaccatcacattca |
42639107 |
T |
|
| Q |
197 |
agtcgaccattaatggctctaatggttgcaccaaaaccttggttgatgacaccgtgcacattattcatccaataccataatgctgtcttgaaggacactg |
296 |
Q |
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| T |
42639108 |
agtcgaccattaatggctctaatggttgcaccaaaaccttggttgatgacaccgtgcacgttattcatccaataccataatgctgtcttgaaggacactg |
42639207 |
T |
|
| Q |
297 |
taggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtccatagttgtagttccaagaaagttgaatcggtcc |
396 |
Q |
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| T |
42639208 |
taggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtccatagttgtagttccaagatagttgaatcggtcc |
42639307 |
T |
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| Q |
397 |
acgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatctcagt |
455 |
Q |
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| T |
42639308 |
acgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatcacagt |
42639366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 72 - 455
Target Start/End: Original strand, 42633903 - 42634289
Alignment:
| Q |
72 |
tattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgt |
171 |
Q |
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|||||||||| | |||||||||||| |||| |||||||||||||||||||||| | |||||||||||||||||||||| ||||||||| || |||||| |
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| T |
42633903 |
tattgtatggattgctagcttagcagttaagcttatcaccaggagcaacacccagttgactacaatattgagtgtagtaatcaacacgagccttaactgt |
42634002 |
T |
|
| Q |
172 |
ggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttg---gttgatgacaccgtgcacattattcatccaa |
268 |
Q |
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| T |
42634003 |
gttggggtcaacaccgtcacattcaagtcgaccattaatggctctaaccgttgcaccaaagccttgttggttcatgacattgtgcacatgattcatccaa |
42634102 |
T |
|
| Q |
269 |
taccataatgctgtcttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtccatagt |
368 |
Q |
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| T |
42634103 |
taccataatgctgtcttgaaggacactaaaggatcattggccactgtttcaggagagttcaattcatcaaaaccactgtcctttccagctggtccgtaat |
42634202 |
T |
|
| Q |
369 |
tgtagttccaagaaagttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatctcagt |
455 |
Q |
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| |||||||||| | ||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||| |||||| |||| |
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| T |
42634203 |
taaagttccaagataattgaatcggtccacggccatagtatcctttgttaggggcacacgggtactctgtgttgctttcatcgcagt |
42634289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 72 - 239
Target Start/End: Original strand, 42628384 - 42628551
Alignment:
| Q |
72 |
tattgtatggctagctagcttagcaagtaaggttatcaccaggagcaacacccaactcactacaatattgagtgtagtaaccaacacgagtctgaactgt |
171 |
Q |
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|||||||||| | |||||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42628384 |
tattgtatggattgctagcttagaaagtaagcttatcaccaggagcaacacccaattgactacaatattgagtgtagcaaccaacacgagtctgaactgt |
42628483 |
T |
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| Q |
172 |
ggatgggttagcaccatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttggt |
239 |
Q |
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| T |
42628484 |
agttggcttagcaccatcacattcaagtcgaccattaatggctctagtggttgcaccaaagccttggt |
42628551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 42628588 - 42628638
Alignment:
| Q |
298 |
aggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtc |
348 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
42628588 |
aggatcattggccactgtttcaggagagttcaatccatcagaaccattgtc |
42628638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Original strand, 42628651 - 42628694
Alignment:
| Q |
385 |
ttgaatcggtccacgaccatagtaacctttgttaggggcacatg |
428 |
Q |
| |
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| T |
42628651 |
ttgaatcggtccacaaccatagaaccctttgttaggggcacatg |
42628694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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