View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19382_high_22 (Length: 464)
Name: NF19382_high_22
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 448
Target Start/End: Complemental strand, 39090176 - 39089741
Alignment:
| Q |
11 |
atcatcattgcatgccacattcgcacaaccaggctcgtgaatagtccttgcatatttccctattccttgtagtggatttgtgtatccacaagcaatacct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39090176 |
atcatcattgcatgccacattcgcacaaccgggctcgtgaatagtccttgcatatttccctattccttgtagtggacttgtgtatccacaagcaatacct |
39090077 |
T |
|
| Q |
111 |
nnnnnnnnnnnnnnnnnngatgacttctcttctcccctcccaacatttcttgaaacatgtgttttgtctggatcacacaatctaaacgtgcnnnnnnnnn |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
39090076 |
aaaaaacaaaaacgaaaagatgacttcttttctcccctcccaacatttctcgaaacatgtgttttgtatggattacacaatctaaacgtgcaaaaaaaaa |
39089977 |
T |
|
| Q |
211 |
nnnnntcccatttttgcacgattgaattatgcaatttgaacagaatgcatgttctgacaaacgttgggatgagaaacattnnnnnnnnnnnncttagcac |
310 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
39089976 |
aaa--tcccatttttgcacgtttgaattatgtaatttgaacagaatgcatgttctgaaaaacgttgggatgagaaacattaaaaagaaaaaacttagcac |
39089879 |
T |
|
| Q |
311 |
tgcattacgaaattatatcccatgtgcctgcataaaacaagggcctaccagcatagttgccgatcatggtgacagtagcattagaattaggcccaattac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39089878 |
tgcattacgaaattatatcccatgtgcctgcataaaacaagggcctaccagcatagttgccgatcatggtgacagtagcattagaattaggcccaattac |
39089779 |
T |
|
| Q |
411 |
tgccacagtccgatgattctttgtggagagaggcaaag |
448 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39089778 |
tgccacagtctgatgattctttgtggagagaggcaaag |
39089741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University