View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_23 (Length: 462)
Name: NF19382_high_23
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 38933844 - 38934266
Alignment:
| Q |
1 |
ttttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggtttatgttgtggaggtttcctattatgggaagagatattgatggacctgg |
100 |
Q |
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| T |
38933844 |
ttttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggtttatgttgtggaggtttcctattatgggaagagatattgatggacctgg |
38933943 |
T |
|
| Q |
101 |
tggaaggtttttgaaatttcttctttggagtaaaagtttcaaggttacaatgaaactaagggaaaggagtgagtaatataacaatggtgttattactaac |
200 |
Q |
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| T |
38933944 |
tggaaggtttttgaactttcttctttggagtaaaagtttcaaggttacaatgaaactaagggaaaggagtgagtaatataacaatggtgttattactaac |
38934043 |
T |
|
| Q |
201 |
attgtattatatatattggttattgtgtttttagctgagtttagagatatcgatgcatggttttatagttgagttgaggaatatattgagaaatgaaaac |
300 |
Q |
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| T |
38934044 |
attgtat----tatattggttattgtgtttttagctgagtttagagatatcgatgcttggttttatagttgagttgaggaatatattgagaaatgaaaac |
38934139 |
T |
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| Q |
301 |
tgaacgaaatttgaaacaggtggagagatattagaggttgccaatttatcaacaaaaggacattgaataatgaaaagagaaaaataaaaatgttttaatt |
400 |
Q |
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| T |
38934140 |
tgaacgaaatttgaaacaggtggagagatattagaggttgccaatttatcaacaaaaggacattgaataatgaaaagagaaaaataaaaatgttttaatt |
38934239 |
T |
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| Q |
401 |
ttctttg--ttgagagaagaaatgtag |
425 |
Q |
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| T |
38934240 |
ttctttgttttgagagaagaaatgtag |
38934266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 3 - 184
Target Start/End: Original strand, 12156014 - 12156195
Alignment:
| Q |
3 |
ttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggtttatgttgtggaggtttcctattatgggaagagatattgatggacctggtg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||| ||||||||||| ||||| |
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| T |
12156014 |
ttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggttgatgtagtggaggtgtcctattaagggaagagttattgatggacttggtg |
12156113 |
T |
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| Q |
103 |
gaaggtttttgaaatttcttctttggagtaaaagtttcaaggttacaatgaaactaagggaaaggagtgagtaatataacaa |
184 |
Q |
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| T |
12156114 |
gaaggtttttaaactttcttctttgtagtaaaagtttcaaggtaaaaatgaaactaagggaaaggagggaataatataacaa |
12156195 |
T |
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