View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_high_25 (Length: 453)

Name: NF19382_high_25
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_high_25
NF19382_high_25
[»] chr2 (13 HSPs)
chr2 (46-435)||(8368203-8368592)
chr2 (46-435)||(8400818-8401207)
chr2 (46-435)||(8422395-8422784)
chr2 (281-391)||(8431135-8431245)
chr2 (281-390)||(8411997-8412106)
chr2 (281-390)||(8417215-8417324)
chr2 (281-390)||(8434095-8434204)
chr2 (9-44)||(8368662-8368697)
chr2 (305-408)||(8375924-8376027)
chr2 (9-44)||(8400713-8400748)
chr2 (9-44)||(8422290-8422325)
chr2 (305-391)||(8439093-8439179)
chr2 (288-324)||(8403987-8404023)
[»] chr4 (3 HSPs)
chr4 (97-159)||(55331029-55331091)
chr4 (97-157)||(55336466-55336526)
chr4 (281-390)||(55336242-55336351)


Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 46 - 435
Target Start/End: Complemental strand, 8368592 - 8368203
Alignment:
Q  46 cacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaa 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8368592 cacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaa 8368493  T
Q  146 aaatatgaacctgcaaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatgga 245  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368492 aaatatgaacctgcaaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatgga 8368393  T
Q  246 atgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaa 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8368392 atgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaa 8368293  T
Q  346 taagacattggctattgcaggaccattactcactggaattgcagctgtggggtccacatttgttggtcaaggttcattggcatctatagt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368292 taagacattggctattgcaggaccattactcactggaattgcagctgtggggtccacatttgttggtcaaggttcattggcatctatagt 8368203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 46 - 435
Target Start/End: Original strand, 8400818 - 8401207
Alignment:
Q  46 cacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaa 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8400818 cacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaa 8400917  T
Q  146 aaatatgaacctgcaaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatgga 245  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400918 aaatatgaacctgcaaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatgga 8401017  T
Q  246 atgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaa 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8401018 atgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaa 8401117  T
Q  346 taagacattggctattgcaggaccattactcactggaattgcagctgtggggtccacatttgttggtcaaggttcattggcatctatagt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8401118 taagacattggctattgcaggaccattactcactggaattgcagctgtggggtccacatttgttggtcaaggttcattggcatctatagt 8401207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 46 - 435
Target Start/End: Original strand, 8422395 - 8422784
Alignment:
Q  46 cacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaa 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8422395 cacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaa 8422494  T
Q  146 aaatatgaacctgcaaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatgga 245  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422495 aaatatgaacctgcaaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatgga 8422594  T
Q  246 atgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaa 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8422595 atgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtgttgaagataaa 8422694  T
Q  346 taagacattggctattgcaggaccattactcactggaattgcagctgtggggtccacatttgttggtcaaggttcattggcatctatagt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422695 taagacattggctattgcaggaccattactcactggaattgcagctgtggggtccacatttgttggtcaaggttcattggcatctatagt 8422784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 391
Target Start/End: Complemental strand, 8431245 - 8431135
Alignment:
Q  281 gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg 380  Q
    ||||| || |||||||||||  | ||||||||||| ||| | |||||| | | ||||||| |||| ||||  ||||| |||||||| ||||||||| | |    
T  8431245 gaagtgataaagagaaaagacgttgaagattatgatagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattactctcag 8431146  T
Q  381 gaattgcagct 391  Q
    |||||||||||    
T  8431145 gaattgcagct 8431135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 390
Target Start/End: Complemental strand, 8412106 - 8411997
Alignment:
Q  281 gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg 380  Q
    ||||| || ||||||||||||   ||||||||||| ||| | |||||| | |  |||||| |||| ||||  ||||| |||||||| ||||||||||| |    
T  8412106 gaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacag 8412007  T
Q  381 gaattgcagc 390  Q
    ||||||||||    
T  8412006 gaattgcagc 8411997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 390
Target Start/End: Complemental strand, 8417324 - 8417215
Alignment:
Q  281 gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg 380  Q
    ||||| || ||||||||||||   ||||||||||| ||| | |||||| | |  |||||| |||| ||||  ||||| |||||||| ||||||||||| |    
T  8417324 gaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacag 8417225  T
Q  381 gaattgcagc 390  Q
    ||||||||||    
T  8417224 gaattgcagc 8417215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 390
Target Start/End: Complemental strand, 8434204 - 8434095
Alignment:
Q  281 gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg 380  Q
    ||||| || ||||||||||||   ||||||||||| ||| | |||||| | |  |||||| |||| ||||  ||||| |||||||| ||||||||||| |    
T  8434204 gaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacag 8434105  T
Q  381 gaattgcagc 390  Q
    ||||||||||    
T  8434104 gaattgcagc 8434095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 8368697 - 8368662
Alignment:
Q  9 gaacaatatccaaccttcacaacttgctgaggagca 44  Q
    |||||| |||||||||||||||||||||||||||||    
T  8368697 gaacaaaatccaaccttcacaacttgctgaggagca 8368662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 408
Target Start/End: Original strand, 8375924 - 8376027
Alignment:
Q  305 gaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactggaattgcagctgtggggtccacat 404  Q
    ||||||||||| ||| | |||||| | | ||||||| |||| ||||  ||||| |||||||| ||||| ||||| |||||||||||| | || || ||||    
T  8375924 gaagattatgacagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatcgacat 8376023  T
Q  405 ttgt 408  Q
    ||||    
T  8376024 ttgt 8376027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 8400713 - 8400748
Alignment:
Q  9 gaacaatatccaaccttcacaacttgctgaggagca 44  Q
    |||||| |||||||||||||||||||||||||||||    
T  8400713 gaacaaaatccaaccttcacaacttgctgaggagca 8400748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 8422290 - 8422325
Alignment:
Q  9 gaacaatatccaaccttcacaacttgctgaggagca 44  Q
    |||||| |||||||||||||||||||||||||||||    
T  8422290 gaacaaaatccaaccttcacaacttgctgaggagca 8422325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 391
Target Start/End: Complemental strand, 8439179 - 8439093
Alignment:
Q  305 gaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactggaattgcagct 391  Q
    ||||||||||| ||| | |||||| | | ||||||| |||| ||||  ||||| |||||||| ||||| ||||| ||||||||||||    
T  8439179 gaagattatgacagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagct 8439093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 8404023 - 8403987
Alignment:
Q  288 tgaagagaaaagatatggaagattatgagagattagg 324  Q
    |||||||||||||||| || |||||||||||||||||    
T  8404023 tgaagagaaaagatattgaggattatgagagattagg 8403987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 55331091 - 55331029
Alignment:
Q  97 agcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctgc 159  Q
    |||||||||||||||||| ||||| |||||| |||||||||| |||  ||||||| |||||||    
T  55331091 agcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgc 55331029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 55336526 - 55336466
Alignment:
Q  97 agcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacct 157  Q
    |||||||||||||||| ||||||||| |||| ||||||| || |||  |||||||||||||    
T  55336526 agcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaacct 55336466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 390
Target Start/End: Complemental strand, 55336351 - 55336242
Alignment:
Q  281 gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg 380  Q
    |||||| | ||||| ||||| || ||||| ||||||||| | |||||  | | ||||||||| || ||||   |||| || ||||| |||||||||||||    
T  55336351 gaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggcaatagcaggtccattactcactg 55336252  T
Q  381 gaattgcagc 390  Q
    ||||||||||    
T  55336251 gaattgcagc 55336242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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