View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_27 (Length: 446)
Name: NF19382_high_27
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_27 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 155 - 427
Target Start/End: Original strand, 14179554 - 14179821
Alignment:
| Q |
155 |
gatagtggaataaaattaaagtatgatattattttttgtcatggattttattcatgcaggatggaccaaatcattgaaaggtacgagagaagtacaggta |
254 |
Q |
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| T |
14179554 |
gatagtggaataaaattgaagtatgatattattttttgtaatggattttattcatgcaggatggaccaaatcattgaaaggtacgagagaagtacaggta |
14179653 |
T |
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| Q |
255 |
aacgcattatggctgaacatgatgatcatcagattcatcccagggtatgagcctcactcctatgctaannnnnnngaatgttgattatgaaaaattaatt |
354 |
Q |
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| T |
14179654 |
aacgcattatggctgaacatgatgatcatcagattcatcccagggtatgtgactcactcctatgctaatttttttaaatgttgattatgaaaaattaatt |
14179753 |
T |
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| Q |
355 |
aagccttgcttgtgtgagagagcttagttatatatgcacatatataaataaattagtacctaatgtaattaat |
427 |
Q |
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| T |
14179754 |
aagccttgc-----tgagagagcttagttatatatgcacatatataaataaattagtacctaatgtaattaat |
14179821 |
T |
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Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 14179418 - 14179525
Alignment:
| Q |
17 |
acaagtaacaaggtcaaaattgagaggttgtggaaacatttgtaattacttgtgttgttatttaactttggtgtttagagaatttcttcaaccaaaatgt |
116 |
Q |
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| T |
14179418 |
acaagtaacaaggtcaaaattgagaggttgtggaaacatttgtaattgcttgtgttgttatttaactttggtgtttagagaatttcttcaaccaaaatgt |
14179517 |
T |
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| Q |
117 |
tatacttg |
124 |
Q |
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| T |
14179518 |
tatacttg |
14179525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 388
Target Start/End: Complemental strand, 96636 - 96581
Alignment:
| Q |
333 |
tgttgattatgaaaaattaattaagccttgcttgtgtgagagagcttagttatata |
388 |
Q |
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| T |
96636 |
tgttaattatgaaaaattaataaagccttgtttgtgcgagagagttcagttatata |
96581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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