View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_high_37 (Length: 395)

Name: NF19382_high_37
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_high_37
NF19382_high_37
[»] chr4 (9 HSPs)
chr4 (71-377)||(10364360-10364661)
chr4 (10-73)||(10364220-10364283)
chr4 (273-345)||(53096343-53096416)
chr4 (270-345)||(44991199-44991274)
chr4 (270-345)||(51175649-51175724)
chr4 (272-345)||(31767735-31767808)
chr4 (119-182)||(25323853-25323916)
chr4 (272-345)||(12191649-12191722)
chr4 (272-344)||(34929385-34929458)
[»] chr7 (7 HSPs)
chr7 (270-345)||(8488605-8488680)
chr7 (272-343)||(19735763-19735834)
chr7 (270-345)||(8515438-8515513)
chr7 (270-345)||(48558084-48558159)
chr7 (274-345)||(17503139-17503211)
chr7 (274-345)||(17550003-17550075)
chr7 (281-317)||(32455163-32455199)
[»] chr8 (5 HSPs)
chr8 (272-345)||(22800465-22800539)
chr8 (119-178)||(44931237-44931296)
chr8 (119-177)||(38476248-38476306)
chr8 (272-345)||(7176953-7177027)
chr8 (270-345)||(43976741-43976816)
[»] chr2 (6 HSPs)
chr2 (272-345)||(39446444-39446518)
chr2 (270-317)||(14332240-14332287)
chr2 (272-307)||(19141944-19141979)
chr2 (272-345)||(21848120-21848194)
chr2 (125-183)||(41112892-41112950)
chr2 (270-345)||(25749565-25749641)
[»] chr6 (2 HSPs)
chr6 (272-344)||(31766305-31766378)
chr6 (270-345)||(10364320-10364396)
[»] chr5 (5 HSPs)
chr5 (273-345)||(42075931-42076004)
chr5 (270-345)||(4740332-4740408)
chr5 (274-344)||(565482-565553)
chr5 (269-315)||(31066221-31066267)
chr5 (276-345)||(8516823-8516892)
[»] chr3 (4 HSPs)
chr3 (272-345)||(1294652-1294725)
chr3 (272-345)||(5992096-5992168)
chr3 (272-345)||(38586062-38586136)
chr3 (269-345)||(35539763-35539839)
[»] chr1 (6 HSPs)
chr1 (270-345)||(26991666-26991741)
chr1 (132-182)||(48114372-48114422)
chr1 (272-345)||(18898044-18898117)
chr1 (272-332)||(28522770-28522831)
chr1 (119-183)||(11524755-11524819)
chr1 (274-345)||(50011388-50011460)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 71 - 377
Target Start/End: Original strand, 10364360 - 10364661
Alignment:
Q  71 tgacccaacggattttggaataggcactgatactatctgaagcattgtggattgcccccacttataaatacttattcatgtcgtctgtcaactgatgtgg 170  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10364360 tgacccaacggattttggaatagccactgatactatctgaagcactgtggattgcccccacttataaacacttattcatgtcgtctgtcaactgatgtgg 10364459  T
Q  171 gactctttaacatggtccaacctaaattttaatatgatgtatagcttatccaagattggtgcaactctagatgttcaatcccaggcgtgataggtttgtt 270  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  10364460 gactctttaacatggtccaacccaaattttaatatgatctatagcttatccaagattggtgccactctagatgttcaatcctaggcgtgataggtttgtt 10364559  T
Q  271 aagagcatccacaatggtagtccactaataaggactcattaaatggaatcacgtgtacacatcacttatttataagtaggttttgtatgaattgatgaca 370  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     |||| |||||||||||||||||||||||    
T  10364560 aagagcatccacaatggtagtccactaataaggactccttaaatggaatcacgtgtacacatcactt-----taaggaggttttgtatgaattgatgaca 10364654  T
Q  371 ggtttgt 377  Q
    |||||||    
T  10364655 ggtttgt 10364661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 10364220 - 10364283
Alignment:
Q  10 acatcatcataacaacaatgccacctccactgtaagtaatccttatctttatactacatgttga 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10364220 acatcatcataacaacaatgccacctccactgtaagtaatccttatctttatactacatgttga 10364283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 53096416 - 53096343
Alignment:
Q  273 gagcatccacaatggtagtccactaataaggactcattaaatggaat-cacgtgtacacatcacttatttataa 345  Q
    ||||||||||||||||||| ||||||||||||||| ||||| ||| | | | ||||||||||||||||||||||    
T  53096416 gagcatccacaatggtagtacactaataaggactccttaaacggactccgcatgtacacatcacttatttataa 53096343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 44991199 - 44991274
Alignment:
Q  270 taagagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||||||||||||||||| | ||||||||||||| ||||| |||   |||||| |||||||||||||||||||    
T  44991199 taagagcatccacaatggtagttccctaataaggactccttaaacggaccccacgtg-acacatcacttatttataa 44991274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 51175724 - 51175649
Alignment:
Q  270 taagagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||||||||||||||||| | |||| |||||||| |||||||||   |||||| |||||||||||||||||||    
T  51175724 taagagcatccacaatggtagttccctaacaaggactccttaaatggaccccacgtg-acacatcacttatttataa 51175649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 31767735 - 31767808
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactcattaaatggaat-cacgtgtacacatcacttatttataa 345  Q
    |||||||||||||||||||| | ||||||||||||  ||||||||| | || ||| |||||||||||||||||||    
T  31767735 agagcatccacaatggtagttctctaataaggacttcttaaatggactccatgtg-acacatcacttatttataa 31767808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 25323853 - 25323916
Alignment:
Q  119 ggattgcccccacttataaatacttattcatgtcgtctgtcaactgatgtgggactctttaaca 182  Q
    ||||||||||||| |||||| |||| |||| ||| ||| ||||| |||||||| ||||||||||    
T  25323853 ggattgcccccacgtataaacacttgttcaggtcatctctcaaccgatgtggggctctttaaca 25323916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 12191722 - 12191649
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||||||||||||||| | |||||||||| || |||||||||   |||||| ||| |||||||||||||||    
T  12191722 agagcatccacaatggtagttccctaataaggaatccttaaatggaccccacgtg-acaaatcacttatttataa 12191649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 34929458 - 34929385
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactcattaaatggaa-tcacgtgtacacatcacttatttata 344  Q
    ||||||| |||||||||| |  |||||||||||||  |||||| ||  |||||||||||||||| |||||||||    
T  34929458 agagcattcacaatggtactgaactaataaggacttcttaaatagatctcacgtgtacacatcatttatttata 34929385  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 8488605 - 8488680
Alignment:
Q  270 taagagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||||  ||||||| |||||||||||||||||||    
T  8488605 taagagcatccacaatggtagttctctaataaggactctttaaatggacttcacgtg-acacatcacttatttataa 8488680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 343
Target Start/End: Complemental strand, 19735834 - 19735763
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactcattaaatggaatcacgtgtacacatcacttatttat 343  Q
    |||| ||||||||||||||||||||||||  ||||| |||||||||  ||||||||||||| | ||||||||    
T  19735834 agagtatccacaatggtagtccactaatagagactccttaaatggacccacgtgtacacataatttatttat 19735763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 8515438 - 8515513
Alignment:
Q  270 taagagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||||||||||||||||| | ||||||||||||  |||||||||   |||||| |||||||||||||||||||    
T  8515438 taagagcatccacaatggtagttctctaataaggacttcttaaatggaccccacgtg-acacatcacttatttataa 8515513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 48558159 - 48558084
Alignment:
Q  270 taagagcatccacaatggtagtccactaataaggactcattaaatggaat-cacgtgtacacatcacttatttataa 345  Q
    |||||||||||||||||||||| ||||||  || |||| ||||||||||| |||||| ||||||||| |||||||||    
T  48558159 taagagcatccacaatggtagttcactaaccagtactctttaaatggaatccacgtg-acacatcacatatttataa 48558084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 17503139 - 17503211
Alignment:
Q  274 agcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||| ||||  ||||||||||||||||||  |||||||||   |||||| |||||||||||||||||||    
T  17503139 agcatccagaatgacagtccactaataaggacttcttaaatggaccccacgtgaacacatcacttatttataa 17503211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 17550075 - 17550003
Alignment:
Q  274 agcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||| ||||  ||||||||||||||||||  |||||||||   |||||| |||||||||||||||||||    
T  17550075 agcatccagaatgacagtccactaataaggacttcttaaatggaccccacgtgaacacatcacttatttataa 17550003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 32455199 - 32455163
Alignment:
Q  281 acaatggtagtccactaataaggactcattaaatgga 317  Q
    ||||||||||||||||||||||||||  |||||||||    
T  32455199 acaatggtagtccactaataaggacttcttaaatgga 32455163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 22800465 - 22800539
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactcattaaatggaat-cacgtgtacacatcacttatttataa 345  Q
    |||||||||||||||||||| |||||||| | |||| ||||||||| | ||| ||||||||||| ||||||||||    
T  22800465 agagcatccacaatggtagtacactaataggaactccttaaatggactccacatgtacacatcatttatttataa 22800539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 44931237 - 44931296
Alignment:
Q  119 ggattgcccccacttataaatacttattcatgtcgtctgtcaactgatgtgggactcttt 178  Q
    |||||||||||||||||||| ||||||||| | | ||| ||||| |||||||||||||||    
T  44931237 ggattgcccccacttataaacacttattcaggccatctctcaaccgatgtgggactcttt 44931296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 38476306 - 38476248
Alignment:
Q  119 ggattgcccccacttataaatacttattcatgtcgtctgtcaactgatgtgggactctt 177  Q
    ||||| |||||||||||||| ||||||||| | | ||| ||||||||||||||||||||    
T  38476306 ggatttcccccacttataaacacttattcaggccatctctcaactgatgtgggactctt 38476248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 7176953 - 7177027
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||||| |||| |||| ||||||||||||||  ||| |||||   ||||||||||||||| ||||||||||    
T  7176953 agagcatccataatgatagtacactaataaggacttcttatatggaccccacgtgtacacatcatttatttataa 7177027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 43976816 - 43976741
Alignment:
Q  270 taagagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||||||||||||||||| | |||| |||||||  |||||||||   |||||| |||||||| ||||||||||    
T  43976816 taagagcatccacaatggtagttccctaacaaggacttcttaaatggaccccacgtg-acacatcatttatttataa 43976741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 39446518 - 39446444
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactcattaaatggaat-cacgtgtacacatcacttatttataa 345  Q
    ||||||||||| |||||||| || ||||| |||||  ||||||||| | ||||||||||||||||||||||||||    
T  39446518 agagcatccacgatggtagtacagtaatatggactacttaaatggactacacgtgtacacatcacttatttataa 39446444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 317
Target Start/End: Original strand, 14332240 - 14332287
Alignment:
Q  270 taagagcatccacaatggtagtccactaataaggactcattaaatgga 317  Q
    |||||||||||||||||||||| | |||| |||||||| |||||||||    
T  14332240 taagagcatccacaatggtagttccctaacaaggactccttaaatgga 14332287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 307
Target Start/End: Complemental strand, 19141979 - 19141944
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactc 307  Q
    ||||||||||||||||||||||| ||||||||||||    
T  19141979 agagcatccacaatggtagtccattaataaggactc 19141944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 21848120 - 21848194
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactcattaaatggaatc-acgtgtacacatcacttatttataa 345  Q
    ||||||||||||| || ||| ||||||||||  ||| |||||| ||  | |||||||||||||||||||||||||    
T  21848120 agagcatccacaaaggaagtacactaataagacctccttaaatagatcccacgtgtacacatcacttatttataa 21848194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 41112950 - 41112892
Alignment:
Q  125 cccccacttataaatacttattcatgtcgtctgtcaactgatgtgggactctttaacat 183  Q
    ||||||||| |||||||||||||||||| ||| ||||| |||||| |||  ||||||||    
T  41112950 cccccacttttaaatacttattcatgtcatctctcaaccgatgtgagacattttaacat 41112892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 25749565 - 25749641
Alignment:
Q  270 taagagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||||||  |||||||||||| |||||  ||||| |||||||||  |||| ||||||||||  ||||||||||    
T  25749565 taagagcatccgaaatggtagtccattaatatagactccttaaatggatctcacatgtacacatcgtttatttataa 25749641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 31766305 - 31766378
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttata 344  Q
    ||||||||||||||||||||||||||| | |||||| ||||||| |  ||| | ||||||||||||||||||||    
T  31766305 agagcatccacaatggtagtccactaacatggactccttaaatgtatctcatgcgtacacatcacttatttata 31766378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 10364396 - 10364320
Alignment:
Q  270 taagagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||| || |||||||||||| |||||||| |||||| || ||||||  |||| ||||||| ||| ||||||||||    
T  10364396 taagagtattcacaatggtagttcactaatagggactccttgaatggacctcacatgtacacctcatttatttataa 10364320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 42075931 - 42076004
Alignment:
Q  273 gagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||| ||||| ||||  ||||||||||||||||||||||||  |||||||||||| ||| ||||||||||    
T  42075931 gagcatccgcaatgatagtaaactaataaggactcattaaatggacctcacgtgtacacgtcatttatttataa 42076004  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 4740332 - 4740408
Alignment:
Q  270 taagagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||||||| ||||||||||||||||||   |||  |||||||||  ||| |||||||||||||||||||||||    
T  4740332 taagagcatccataatggtagtccactaatagaaactttttaaatggacctcatgtgtacacatcacttatttataa 4740408  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 565553 - 565482
Alignment:
Q  274 agcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttata 344  Q
    |||||| ||||||||||||| ||||||||||||| |||||||||   |  ||||||||||||||||||||||    
T  565553 agcatctacaatggtagtccgctaataaggactccttaaatggaccccgtgtgtacacatcacttatttata 565482  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 31066221 - 31066267
Alignment:
Q  269 ttaagagcatccacaatggtagtccactaataaggactcattaaatg 315  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||    
T  31066221 ttaagagcatccacaatggtagtacactaatagggactccttaaatg 31066267  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 8516823 - 8516892
Alignment:
Q  276 catccacaatggtagtccactaataaggactcattaaatggaat-cacgtgtacacatcacttatttataa 345  Q
    |||||||||||||||| | |||| |||||||| ||||||||| | |||||| |||||||| ||||||||||    
T  8516823 catccacaatggtagttccctaacaaggactccttaaatggactccacgtg-acacatcatttatttataa 8516892  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 1294725 - 1294652
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||||||||||||||| |  |||||||||||| |||||||||   |||||| |||||||||||||||||||    
T  1294725 agagcatccacaatggtagttccttaataaggactccttaaatggaccccacgtg-acacatcacttatttataa 1294652  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 5992096 - 5992168
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactcattaaatggaatcacgtgtacacatcacttatttataa 345  Q
    ||||||| |||||||||||| | |||| ||| |||| |||||||||  |||||| |||||||||||||||||||    
T  5992096 agagcattcacaatggtagttccctaacaagaactctttaaatggacccacgtg-acacatcacttatttataa 5992168  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 38586136 - 38586062
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||||||||||||||| |||||| |  ||||| |||||||||  |||| ||||||| | ||||||||||||    
T  38586136 agagcatccacaatggtagtacactaacatagactccttaaatggacttcacttgtacacgttacttatttataa 38586062  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 345
Target Start/End: Original strand, 35539763 - 35539839
Alignment:
Q  269 ttaagagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    ||||||||||||||||||||||| |  ||||| |||||| |||| ||||   ||||| ||||||||||||||||||||    
T  35539763 ttaagagcatccacaatggtagttccttaatagggactccttaagtggaccccacgt-tacacatcacttatttataa 35539839  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 26991666 - 26991741
Alignment:
Q  270 taagagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacatcacttatttataa 345  Q
    |||||||||||||||||||||| |  ||| |||||||| |||||||||  ||||||| ||| |||||||||||||||    
T  26991666 taagagcatccacaatggtagttccttaacaaggactctttaaatggacctcacgtg-acatatcacttatttataa 26991741  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 48114422 - 48114372
Alignment:
Q  132 ttataaatacttattcatgtcgtctgtcaactgatgtgggactctttaaca 182  Q
    ||||||||||||||||||||| ||| ||||| |||||| |||||| |||||    
T  48114422 ttataaatacttattcatgtcatctctcaaccgatgtgagactctctaaca 48114372  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 18898044 - 18898117
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactcattaaatggaatcacgtgtacacatcacttatttataa 345  Q
    |||||||| ||||||||||| ||||||||| ||||| |||||| ||  ||| | ||||||| | ||||||||||    
T  18898044 agagcatcaacaatggtagtacactaataaagactctttaaatagacccacatatacacattatttatttataa 18898117  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 28522770 - 28522831
Alignment:
Q  272 agagcatccacaatggtagtccactaataaggactcattaaatgga-atcacgtgtacacat 332  Q
    ||||||||||||||| |||| ||||||||||||||  |||||| ||  ||||||||||||||    
T  28522770 agagcatccacaatgatagttcactaataaggacttcttaaatagacctcacgtgtacacat 28522831  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 11524819 - 11524755
Alignment:
Q  119 ggattgcccccacttataaatacttattcatgtcgtctgtcaactgatgtgggactctttaacat 183  Q
    ||||||||| |||||||||| ||||||||| ||| | | ||||| ||  ||||||||||||||||    
T  11524819 ggattgcccgcacttataaacacttattcaggtcatttctcaaccgacatgggactctttaacat 11524755  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 50011388 - 50011460
Alignment:
Q  274 agcatccacaatggtagtccactaataaggactcattaaatggaatc-acgtgtacacatcacttatttataa 345  Q
    |||||||| ||| ||| | || ||||| |||||| ||||||||| || ||||||||| |||||||||||||||    
T  50011388 agcatccataatagtattgcattaatagggactctttaaatggactccacgtgtacatatcacttatttataa 50011460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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