View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_40 (Length: 381)
Name: NF19382_high_40
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 197 - 350
Target Start/End: Complemental strand, 38014619 - 38014466
Alignment:
| Q |
197 |
cgagctaaccaaacgtaaagtaaagtaagtgattttcacgtggaccggataaaaacaaaagtcattttcatttcat-gtgagaaaacatctgtctccatc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| |
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| T |
38014619 |
cgagctaaccaaacgtaaagtaaagtaagtgattttgacgtgaaccggataaaaacaaa-gtcattttcatttaattgtgagaaaacatctgtctccatc |
38014521 |
T |
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| Q |
296 |
gtatttgtgccaactcaccacccattgagacaaagattcgttcatcctttcctcc |
350 |
Q |
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| T |
38014520 |
gtatttgtgccacctcaccacccattgagacaaagattcgttcatcctttcctcc |
38014466 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 19934592 - 19934521
Alignment:
| Q |
54 |
taagataaccaaaattagtagttttacatt-nnnnnnncaatttataaattttttacaagttgacttcacca |
124 |
Q |
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| T |
19934592 |
taagataaccaaaattagtagttttacattaaaaacaacaatttataaactttttacaagttgacttgacca |
19934521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 35729553 - 35729487
Alignment:
| Q |
59 |
taaccaaaattagtagttttacattnnnnnnnc-aatttataaattttttacaagttgacttcacca |
124 |
Q |
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| T |
35729553 |
taaccaaaattagtagttttacattggaaacaataatttataaattttttacaagttgacttaacca |
35729487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 39873405 - 39873377
Alignment:
| Q |
91 |
caatttataaattttttacaagttgactt |
119 |
Q |
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| T |
39873405 |
caatttataaattttttacaagttgactt |
39873377 |
T |
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