View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_45 (Length: 355)
Name: NF19382_high_45
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_45 |
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| [»] scaffold0607 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 58 - 185
Target Start/End: Complemental strand, 19067701 - 19067574
Alignment:
| Q |
58 |
gaatatcaataagaccagcatcaagaactgcttgtcgaaagctttgaattaaataaggttgcctccctgatcttccnnnnnnncttccaccgtcagaatg |
157 |
Q |
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| T |
19067701 |
gaatattaataagaccagcatcaagaactgcttgtcgaaagctttgaaataaagaaggttgcctccctgatcttcctttttttcttccactgtctgaatg |
19067602 |
T |
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| Q |
158 |
tcattcaagatcccaataacacaccatg |
185 |
Q |
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| T |
19067601 |
tcattcaagtccccaataacacaccatg |
19067574 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 32954038 - 32953955
Alignment:
| Q |
23 |
acttttgaaccaagtgaaagaatacccctccattggaatatcaataagaccagcatcaagaactgcttgtcgaaagctttgaat |
106 |
Q |
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| T |
32954038 |
acttttgaaccaagtgaaagcataaccatccataggaatatcagcaagtccagcatccaaaacagcttgtcgaaagccttgaat |
32953955 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 16322105 - 16322044
Alignment:
| Q |
18 |
cctaaacttttgaaccaagtgaaagaatacccctccattggaatatcaataagaccagcatc |
79 |
Q |
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| T |
16322105 |
cctaaacttttgaaccacgtgaatgggtacccctccatatgcatatcaataagaccagcatc |
16322044 |
T |
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Target: scaffold0607 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0607
Description:
Target: scaffold0607; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 7114 - 7058
Alignment:
| Q |
23 |
acttttgaaccaagtgaaagaatacccctccattggaatatcaataagaccagcatc |
79 |
Q |
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| T |
7114 |
acttttgaaccaagtgaaagcataaccatccatatgaatatcaataagtccaacatc |
7058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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