View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_47 (Length: 353)
Name: NF19382_high_47
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 24 - 336
Target Start/End: Original strand, 52035874 - 52036183
Alignment:
| Q |
24 |
gtgttcttgcaagttgtttggataattgatgaaaagaatgaatgaaaaatgtaagaggatggaattgataaaccactcaatagattacattaaccattat |
123 |
Q |
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| T |
52035874 |
gtgttcttgcaagttgtttggataattgatgaaaagaatgaatgaaaaatgtaagaggatggaattgataaaccactcaatagattacattaaccatt-- |
52035971 |
T |
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| Q |
124 |
ttaaccgttttctgtgggaacaggggatgcctcaacattaggcaaggcaactactgttgttagtctgtttgagattctatacagcaagtaaacaataatt |
223 |
Q |
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| T |
52035972 |
-taaccgttttctgtgggaacaggggatgcctcaacataaggcaaggcaactactgttgttagtctgtttgagattctatacaacaagtaaacaataatt |
52036070 |
T |
|
| Q |
224 |
gcgaatgctaattaagttcacaacaacgagcaattgcatttattccatttaataagaatctctattggtgttgcacaaattcactatacacaggttcaga |
323 |
Q |
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| T |
52036071 |
gcgaatgctaattaagttcacaacaacgaccaattgcatttattccatttaataagaatctctattggtgttgcacaaattcactatacacaggttcaga |
52036170 |
T |
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| Q |
324 |
ttaatacaaccat |
336 |
Q |
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||||||||||||| |
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| T |
52036171 |
ttaatacaaccat |
52036183 |
T |
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