View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_48 (Length: 347)
Name: NF19382_high_48
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_48 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 53033834 - 53033496
Alignment:
| Q |
16 |
aattgtagtaaccatccacgttcaacagccccacctatgcgtcccattcattattaccaattttacattttattctcatttttatagtaatatacattaa |
115 |
Q |
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| T |
53033834 |
aattgtagtaaccatccacgttcaacagccccacctatgcgtcccattcattattaccaattttacattttattctcatttttatagtaatatacattaa |
53033735 |
T |
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| Q |
116 |
atacgttatgtcgtttttactttgacttcttcttcaaacaaagggcaacaatcttaccggtttatcatggatacctagttgagcccaggtaataatttcc |
215 |
Q |
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| T |
53033734 |
atacgttatgtcgtttttactttgacttcttcttcaaacaaagggcaacaatcttaccggtttatcatggatacctagttgagcccaggtaataatttcc |
53033635 |
T |
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| Q |
216 |
aaaagttcttcgagggtgccatatccacctgttgaaatttaaatttga-----------aatactttttgtttggaaagggggtggtaataataataagg |
304 |
Q |
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| T |
53033634 |
aaaagttcttcgagggtgccatatccacctgttgaaatttaaatttgaaatagattagtaatactttttgtttggaaagggggtggtaataataataagg |
53033535 |
T |
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| Q |
305 |
taggagtaggtaactcactgcatgcataataacagtgcagatc |
347 |
Q |
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| T |
53033534 |
taggagtaggta----actgcatgcataataacagtgcagatc |
53033496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 25026480 - 25026543
Alignment:
| Q |
183 |
tggatacctagttgagcccaggtaataatttccaaaagttcttcgagggtgccatatccacctg |
246 |
Q |
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| T |
25026480 |
tggatcccaagttgagcccaagtaataatttccagcaattcttcaagggttccatatccacctg |
25026543 |
T |
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