View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_52 (Length: 336)
Name: NF19382_high_52
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 3730475 - 3730630
Alignment:
| Q |
1 |
aaacaaaaaatggggtttaagc-aaaaattaccatgagaagatgaagcagattttggggcatcagtctctgacatagctttgataggaatacacctgaat |
99 |
Q |
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| T |
3730475 |
aaacaaaaaatggggtttaagccaaaaattaccatgagaagacgaagcagattttggggcatcagtctctgacatagctttgataggaatacacctgaat |
3730574 |
T |
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| Q |
100 |
cgcagtgaagataaagaaacctgaacatactcatttcaaaatcaatatcattgaac |
155 |
Q |
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| T |
3730575 |
cgcagtgaagataaagaaacctgaacatacccatttcaaaatcaatatcattgaac |
3730630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 41892302 - 41892220
Alignment:
| Q |
73 |
atagctttgataggaatacacctgaatcgcagtgaagataaagaaacctgaacatactcatttcaaaatcaatatcattgaac |
155 |
Q |
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| T |
41892302 |
ataggtttgataggaatacacctgaatcgctgagaagatgaagaaacctgaacatacccatttcaaaatcaataccattgaac |
41892220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 41892373 - 41892328
Alignment:
| Q |
12 |
ggggtttaagcaaaaatt-accatgagaagatgaagcagattttgg |
56 |
Q |
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| T |
41892373 |
ggggtttaagcaaaaaatgaccatgagtagatgaagcagattttgg |
41892328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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