View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_54 (Length: 325)
Name: NF19382_high_54
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_54 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 44817006 - 44817323
Alignment:
| Q |
1 |
ctctgacttcaatcactaattatgcaaagcatgactcttttaaagtgtaaagtatcagttttgaaactaaataagggagtcataacgatagattttattt |
100 |
Q |
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| T |
44817006 |
ctctgacttgaatcactaattatgcaaagcatgactcttttaaagtgtaaagtatcagttttgaaactaaataagggagtcataacgatagattttattt |
44817105 |
T |
|
| Q |
101 |
tttaatccatgtccttttccttatgtactcaattgctatattcccaataagatctgattctttgtaaaagaatattattgtcattgagttgatacatcat |
200 |
Q |
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| T |
44817106 |
tttaatccatgtccttttccttatgtactcaattgctatattcccaataagatctgattctttgtaaaagaatattattgtcattgggttgatacatcat |
44817205 |
T |
|
| Q |
201 |
acctgagattttttgttggtgattattttcattgctgtaaaataattgttcaacaagagtagatgttatatgcctttcatttattgtcattttataggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44817206 |
acctgagattttttgttggtgattattttcattgctgtaaaataattgttcaacaagagtagatgttatatgcctttcatttattgtcattttataggtt |
44817305 |
T |
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| Q |
301 |
aaggtgccatattcttcg |
318 |
Q |
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|||||||||| ||||||| |
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| T |
44817306 |
aaggtgccattttcttcg |
44817323 |
T |
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