View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_55 (Length: 321)
Name: NF19382_high_55
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 26765594 - 26765308
Alignment:
| Q |
19 |
gaaatgttaaaaaaggaaccccagaaaaaataccttcaataacagaattccaaccacaatgtgtccaataaccacctacagaaggatgtgacaatactct |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
26765594 |
gaaatgttaaaaaaggaaccccagaaaaaacaccttcaataacagaattccaaccacaatgtgtccaataaccacctatagaaggatgtgacaataccgt |
26765495 |
T |
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| Q |
119 |
caattggtcacaccatgtcacaacaaaccccattttcccacacatatgtttcaatctatgagtctcgtctcgtgttacccacaagaatcgaacaccacta |
218 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| |
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| T |
26765494 |
caattggtcacaccatggcacaacaaaccccattttcccacacatatgtttcaatctatgagtctcgtcacgcgttacccacaagaaccgaacaccacta |
26765395 |
T |
|
| Q |
219 |
tcatgcaatgcagatgcaatttcatccatttgtgttcttgaaacggatagataacttccatatgaaatgtacaaaacagaaccatta |
305 |
Q |
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| T |
26765394 |
tcgtgcaatgcagctgcaatatcatccatttgtgttcttgaaaccgatagataacttccatatgaaatgtacaaaacagaaccatta |
26765308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 26785696 - 26785412
Alignment:
| Q |
19 |
gaaatgttaaaaaaggaaccccagaaaaaataccttcaataacagaattccaaccacaatgtgtccaataaccacctacagaaggatgtgacaatactct |
118 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |
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| T |
26785696 |
gaaatgttaaaaaaggaaccccagaaaaaacaccttcaataactgaattccaaccacaatgtgtccaataaccacctatagaaggatgtaacaataccct |
26785597 |
T |
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| Q |
119 |
caattggtcacaccatgtcacaacaaaccccattttcccacacatatgtttcaatctatgagtctcgtctcgtgttacccacaagaatcgaacaccacta |
218 |
Q |
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| T |
26785596 |
caattggtcacaccatgtcacaacaaaccccattttcccacacatatgtttcaatctatgagtctcgtcgcgcgctacccacaagaaccgaacaccacta |
26785497 |
T |
|
| Q |
219 |
tcatgcaatgcagatgcaatttcatccatttgtgttcttgaaacggatagataacttccatatgaaatgtacaaaacagaaccat |
303 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| |
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| T |
26785496 |
tcctgcaatgcagctgcaatttcatccatttgtgttcttgaaaccgatagataactgccatatgaaatgtacaaaacggaaccat |
26785412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 32075099 - 32075170
Alignment:
| Q |
63 |
gaattccaaccacaatgtgtccaataaccacctacagaaggatgtgacaatactctcaattggtcacaccat |
134 |
Q |
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| T |
32075099 |
gaattccaaccacaatgagaccaaaatccaccaatagaaggatgtgacaaaactctcaattggtcacaccat |
32075170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 31005902 - 31005831
Alignment:
| Q |
63 |
gaattccaaccacaatgtgtccaataaccacctacagaaggatgtgacaatactctcaattggtcacaccat |
134 |
Q |
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||||||||||||||||||| |||| | ||||| | ||||| ||||||||| ||||||||||||| ||||||| |
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| T |
31005902 |
gaattccaaccacaatgtgaccaaaatccaccaatagaagaatgtgacaacactctcaattggttacaccat |
31005831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 31010568 - 31010461
Alignment:
| Q |
63 |
gaattccaaccacaatgtgtccaataaccacctacagaaggatgtgacaatactctcaattggtcacaccatgtcacaacaaaccccattttcccacaca |
162 |
Q |
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|||||||| |||||||||| |||| ||||||||| || | ||| ||| |||||||||||||||||||||| || ||||||||| ||| |||||| | |
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| T |
31010568 |
gaattccacccacaatgtgaccaaaaaccacctatagcactatgcatcaacactctcaattggtcacaccatggcaaaacaaaccctttttccccacaaa |
31010469 |
T |
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| Q |
163 |
tatgtttc |
170 |
Q |
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||| |||| |
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| T |
31010468 |
tatctttc |
31010461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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