View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_high_62 (Length: 290)

Name: NF19382_high_62
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_high_62
NF19382_high_62
[»] chr6 (5 HSPs)
chr6 (20-265)||(9639-9885)
chr6 (20-265)||(12365-12611)
chr6 (121-230)||(3185831-3185940)
chr6 (20-77)||(17589-17646)
chr6 (30-200)||(30641461-30641608)
[»] chr8 (12 HSPs)
chr8 (23-205)||(11676427-11676609)
chr8 (30-200)||(7839829-7839998)
chr8 (100-232)||(13958504-13958636)
chr8 (88-208)||(30735753-30735866)
chr8 (141-231)||(990109-990199)
chr8 (130-205)||(11668232-11668307)
chr8 (126-182)||(29668919-29668975)
chr8 (30-77)||(29668843-29668890)
chr8 (23-77)||(11668165-11668218)
chr8 (120-163)||(33880786-33880829)
chr8 (230-276)||(29668974-29669020)
chr8 (30-77)||(990210-990256)
[»] chr4 (8 HSPs)
chr4 (30-270)||(28071171-28071417)
chr4 (87-213)||(2035238-2035364)
chr4 (86-231)||(25536838-25536977)
chr4 (86-230)||(25516641-25516779)
chr4 (30-138)||(50063840-50063950)
chr4 (230-270)||(50063980-50064020)
chr4 (148-182)||(50063947-50063981)
chr4 (49-77)||(2035382-2035410)
[»] chr3 (13 HSPs)
chr3 (30-265)||(27221502-27221722)
chr3 (30-223)||(35127000-35127178)
chr3 (141-265)||(37921748-37921871)
chr3 (23-223)||(2545096-2545290)
chr3 (141-231)||(36430155-36430244)
chr3 (100-206)||(9291948-9292047)
chr3 (148-231)||(9308794-9308877)
chr3 (148-265)||(46278805-46278927)
chr3 (23-77)||(46278656-46278709)
chr3 (43-77)||(37921915-37921949)
chr3 (242-270)||(2545291-2545319)
chr3 (49-77)||(36430092-36430120)
chr3 (99-139)||(46278727-46278767)
[»] chr1 (6 HSPs)
chr1 (23-171)||(35754153-35754300)
chr1 (151-270)||(23552337-23552455)
chr1 (23-77)||(32060440-32060493)
chr1 (198-270)||(35754296-35754367)
chr1 (141-182)||(8082025-8082066)
chr1 (49-77)||(8081986-8082014)
[»] chr5 (4 HSPs)
chr5 (49-270)||(2643430-2643636)
chr5 (120-231)||(11016207-11016318)
chr5 (122-163)||(14435405-14435446)
chr5 (160-201)||(14435282-14435323)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 9885 - 9639
Alignment:
Q  20 ttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattnnnnnnnn-gcacaagaatactagaacaggagaagaaggaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||| ||||||||||||||||||||    
T  9885 ttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattaaaaaaaaagcacaagaatacaagaacaggagaagaaggaat 9786  T
Q  119 atgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgtta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9785 atgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgtta 9686  T
Q  219 aggtttgcgattttcagtttgtccctgctgcctgccgtttgcgattt 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9685 aggtttgcgattttcagtttgtccctgctgcctgccgtttgcgattt 9639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 12611 - 12365
Alignment:
Q  20 ttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattnnnnnnnn-gcacaagaatactagaacaggagaagaaggaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||| ||||||||||||||||||||    
T  12611 ttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattaaaaaaaaagcacaagaatacaagaacaggagaagaaggaat 12512  T
Q  119 atgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgtta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12511 atgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgtta 12412  T
Q  219 aggtttgcgattttcagtttgtccctgctgcctgccgtttgcgattt 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  12411 aggtttgcgattttcagtttgtccctgctgcctgccgtttgcgattt 12365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 3185940 - 3185831
Alignment:
Q  121 gaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaag 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||    
T  3185940 gaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctctttcttcag 3185841  T
Q  221 gtttgcgatt 230  Q
    ||||||||||    
T  3185840 gtttgcgatt 3185831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 17646 - 17589
Alignment:
Q  20 ttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17646 ttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 17589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 30641608 - 30641461
Alignment:
Q  30 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattnnnnnnnngcacaagaatactagaacaggagaagaaggaatatgaatcttat 129  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||| |||||||| ||||||||||| |||||||       
T  30641608 gaaaattcagaaattt-gaacaggagaaaaggaatcgaatctcatattaaaaaaaagcacaagaatacaagaacaggcgaagaaggaatctgaatct--- 30641513  T
Q  130 cttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttctt 200  Q
                       ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  30641512 -------------------tacttacttctcttcctgcttgcgatttccgattctggtgttgccgtttctt 30641461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 11676427 - 11676609
Alignment:
Q  23 cagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattnnnnnnnn-gcacaagaatactagaacaggagaagaaggaatatg 121  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||         |||||||||||| |||||||||||||||||||| ||    
T  11676427 cagacttgaaaattcagtaattt-gaacaggagaaaaggaatcgaatctcatattaaaaaaaaagcacaagaatacaagaacaggagaagaaggaatctg 11676525  T
Q  122 aatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttc 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11676526 aatcttatcttttttacacaaatgaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttc 11676609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 7839998 - 7839829
Alignment:
Q  30 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattnnnnnnnngcacaagaatactagaacaggagaagaaggaatatgaatcttat 129  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||        |||||||||||| |||||||||||||||||||| ||||||||||    
T  7839998 gaaaattcagaaattt-gaacaggagaaaaggaaacgaatctcatattaaaaaaaagcacaagaatacaagaacaggagaagaaggaatctgaatcttat 7839900  T
Q  130 cttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttctt 200  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  7839899 cttttttacacaaaccaattacttacttctgttcctgcttgcgatttgcgactctggtgttgccgtttctt 7839829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 100 - 232
Target Start/End: Original strand, 13958504 - 13958636
Alignment:
Q  100 gaacaggagaagaaggaatatgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttct 199  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13958504 gaacaggggaagaaggaatctgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttct 13958603  T
Q  200 tgcttcactctctttgttaaggtttgcgatttt 232  Q
    ||||||| ||||||| || ||||||||||||||    
T  13958604 tgcttcattctctttcttcaggtttgcgatttt 13958636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 30735866 - 30735753
Alignment:
Q  88 acaagaatactagaacaggagaagaaggaatatgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggt 187  Q
    |||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  30735866 acaagaatacaacaacaggagaagaaggaatctgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgc-------gattctggt 30735774  T
Q  188 gttgccgtttcttgcttcact 208  Q
    |||||||||||||||||||||    
T  30735773 gttgccgtttcttgcttcact 30735753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 990199 - 990109
Alignment:
Q  141 aaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggtttgcgattt 231  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  990199 aaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctctttcttcaggtttgcgattt 990109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 11668232 - 11668307
Alignment:
Q  130 cttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttc 205  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  11668232 cttttttacacaaatgaattacttacttctcttcctgcttgcgacttgcgattctggtgttgccgtttcttgcttc 11668307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 29668919 - 29668975
Alignment:
Q  126 ttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgatt 182  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29668919 ttatcctttttacacaaatcaattacttacttctcttcctgcttgcgatttgcgatt 29668975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 29668843 - 29668890
Alignment:
Q  30 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29668843 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 29668890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 11668165 - 11668218
Alignment:
Q  23 cagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 77  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  11668165 cagacttgaaaattcagtaattt-gaacaggagaaaaggaatcgaatctcatatt 11668218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 33880786 - 33880829
Alignment:
Q  120 tgaatcttatcttttttacacaaatcaattacttacttctcttc 163  Q
    |||||||||||||||||| ||||||||| |||||||||||||||    
T  33880786 tgaatcttatcttttttatacaaatcaactacttacttctcttc 33880829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 29668974 - 29669020
Alignment:
Q  230 tttcagtttgtccctgctgcctgccgtttgcgatttgcgatattctt 276  Q
    ||||||||||| |||||||| |||||||||||||||||||| |||||    
T  29668974 tttcagtttgttcctgctgcttgccgtttgcgatttgcgattttctt 29669020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 990256 - 990210
Alignment:
Q  30 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 77  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  990256 gaaaattcataaatttt-aacaggagaaaagaaatcgaatctcatatt 990210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 28071417 - 28071171
Alignment:
Q  30 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattnnnnnnnn-------gcacaagaatactagaacaggagaagaaggaatatga 122  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||               |||||||||||| |||||||||||||||||||| |||    
T  28071417 gaaaattcagaaattt-gaacaggagaaaaggaatcgaatctcatattaaaaaaaaaaaaaaagcacaagaatacaagaacaggagaagaaggaatctga 28071319  T
Q  123 atcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggt 222  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| ||||    
T  28071318 atcttatcttttttgcacaaatgaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcattctatttgttcaggt 28071219  T
Q  223 ttgcgattttcagtttgtccctgc-tgcctgccgtttgcgatttgcgat 270  Q
    ||  || ||||||||||| ||||| ||| ||||||||| ||||||||||    
T  28071218 ttaaga-tttcagtttgttcctgcttgcttgccgtttgtgatttgcgat 28071171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 87 - 213
Target Start/End: Complemental strand, 2035364 - 2035238
Alignment:
Q  87 cacaagaatactagaacaggagaagaaggaatatgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctgg 186  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2035364 cacaagaatacaagaacaggagaagaaggaatctgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgcgattctgg 2035265  T
Q  187 tgttgccgtttcttgcttcactctctt 213  Q
    |||||||||||||||||||||||||||    
T  2035264 tgttgccgtttcttgcttcactctctt 2035238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 231
Target Start/End: Original strand, 25536838 - 25536977
Alignment:
Q  86 gcacaagaatactagaacaggagaagaaggaatatgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgatt--- 182  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||||             |||||||||||||||||||||||||| ||||       
T  25536838 gcacaagaatataagaacaggagaagaaggaatctgaatcttatcttttttac-------------ttacttctcttcctgcttgcgatttgcgatttgc 25536924  T
Q  183 ----ctggtgttgccgtttcttgcttcactctctttgttaaggtttgcgattt 231  Q
        |||||||||||||||||||||||||||||||| || || ||||||||||    
T  25536925 gattctggtgttgccgtttcttgcttcactctctttcttcagctttgcgattt 25536977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 86 - 230
Target Start/End: Complemental strand, 25516779 - 25516641
Alignment:
Q  86 gcacaagaatactagaacaggagaagaaggaatatgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgatt--- 182  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||||             |||||||||||||||||||||||||| ||||       
T  25516779 gcacaagaatataagaacaggagaagaaggaatctgaatcttatcttttttac-------------ttacttctcttcctgcttgcgatttgcgatttgc 25516693  T
Q  183 ----ctggtgttgccgtttcttgcttcactctctttgttaaggtttgcgatt 230  Q
        |||||||||||||||||||||||||||||||| || || |||||||||    
T  25516692 gattctggtgttgccgtttcttgcttcactctctttcttcagctttgcgatt 25516641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 50063840 - 50063950
Alignment:
Q  30 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattnnnnnnnngcacaa-gaat-actagaacaggagaagaaggaatatgaatctt 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||          | || |||| || |||||||||||||||||||| ||||||||    
T  50063840 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattcatatttaaaaaaaggaatcacaagaacaggagaagaaggaatctgaatctt 50063939  T
Q  128 atcttttttac 138  Q
    |||||||||||    
T  50063940 atcttttttac 50063950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 50063980 - 50064020
Alignment:
Q  230 tttcagtttgtccctgctgcctgccgtttgcgatttgcgat 270  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  50063980 tttcagtttgttcctgctgcttgccgtttgcgatttgcgat 50064020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 50063947 - 50063981
Alignment:
Q  148 ttacttacttctcttcctgcttgcgatttgtgatt 182  Q
    |||||||||||||||||||||||||||||| ||||    
T  50063947 ttacttacttctcttcctgcttgcgatttgcgatt 50063981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 2035410 - 2035382
Alignment:
Q  49 acaggagaaaaggaatcgaatctcatatt 77  Q
    |||||||||||||||||||||||||||||    
T  2035410 acaggagaaaaggaatcgaatctcatatt 2035382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 30 - 265
Target Start/End: Original strand, 27221502 - 27221722
Alignment:
Q  30 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattnnnnnnnngcacaagaatactagaacaggagaagaaggaatatgaatcttat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||              ||||||| ||||||||||    
T  27221502 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattaaaaaaaagcacaagaatac--------------aaggaatctgaatcttat 27221587  T
Q  130 cttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggtttgcgat 229  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||     
T  27221588 cttttttacacacatcaattacttacttctcttccttcttccgatttgcgattctggtgttgccgtttcttgcttcactctctttcttcaggtttgcga- 27221686  T
Q  230 tttcagtttgtccctgctgcctgccgtttgcgattt 265  Q
    ||||||||||| |||||||| |||||||||||||||    
T  27221687 tttcagtttgttcctgctgcttgccgtttgcgattt 27221722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 35127178 - 35127000
Alignment:
Q  30 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattnnnnnnnngcacaagaatactagaacaggagaagaaggaatatgaatcttat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||| |||||||||               |||||||    
T  35127178 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattgaaaaaaagcacaagaatacaagaacagga---------------atcttat 35127094  T
Q  130 cttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggtt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| || |||||    
T  35127093 cttttttacacaaatcaattacttacttctcttcctgcttgcgatttgccattctggtgttgccgtttcttgcttcactctctttcttcaggtt 35127000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 141 - 265
Target Start/End: Complemental strand, 37921871 - 37921748
Alignment:
Q  141 aaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggtttgcgattttcagtttgt 240  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||    
T  37921871 aaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctcttcgttcaggtttgcga-tttcagtttgt 37921773  T
Q  241 ccctgctgcctgccgtttgcgattt 265  Q
     |||||||| |||||||||||||||    
T  37921772 tcctgctgcttgccgtttgcgattt 37921748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 2545096 - 2545290
Alignment:
Q  23 cagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattnnnnnnnngcacaagaatactagaacaggagaaga-aggaatatg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          | || || |  | ||||  |||| | | ||| | |    
T  2545096 cagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatttaa-------aaaaaaaaaaaaaaacacaagaatacaagaacagg 2545188  T
Q  122 aatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaagg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||| |||    
T  2545189 aatcttatcttttttacacaaatcaattacttacttctcttcctgcttgagatttgcgattcttgtgttgccgtttcttgcttcactctctttgttcagg 2545288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 36430155 - 36430244
Alignment:
Q  141 aaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggtttgcgattt 231  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  36430155 aaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctc-ttgttcaggtttgcgattt 36430244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 9291948 - 9292047
Alignment:
Q  100 gaacaggagaagaaggaatatgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttct 199  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  9291948 gaacaggagaagaagaaatctgaatctaatcttttttacacaaatcaattacttacttctcttcctgcttgc-------gattctggtgttgccgtttct 9292040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 9308877 - 9308794
Alignment:
Q  148 ttacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggtttgcgattt 231  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| || |||||||||||||    
T  9308877 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttgccgtttcttgcttcattctctttcttcaggtttgcgattt 9308794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 265
Target Start/End: Original strand, 46278805 - 46278927
Alignment:
Q  148 ttacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgc------ttcactctctttgttaaggtttgcgattttcagtttgtc 241  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||      |||| |||||||||| |||||||||| ||||||||||      
T  46278805 ttacttacttctcttcatgcttgcgatttgcgattttggtgttgccgtttcttgcttcttgttcattctctttgttcaggtttgcga-tttcagtttggt 46278903  T
Q  242 cctgctgcctgccgtttgcgattt 265  Q
    |||||||| |||||||||||||||    
T  46278904 cctgctgcttgccgtttgcgattt 46278927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 46278656 - 46278709
Alignment:
Q  23 cagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 77  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46278656 cagacttgaaaattcagaaattt-gaacaggagaaaaggaatcgaatctcatatt 46278709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 37921949 - 37921915
Alignment:
Q  43 ttttgaacaggagaaaaggaatcgaatctcatatt 77  Q
    |||||||||||||||||||||||||||||||||||    
T  37921949 ttttgaacaggagaaaaggaatcgaatctcatatt 37921915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 2545291 - 2545319
Alignment:
Q  242 cctgctgcctgccgtttgcgatttgcgat 270  Q
    |||||||||||||||||||||||||||||    
T  2545291 cctgctgcctgccgtttgcgatttgcgat 2545319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 36430092 - 36430120
Alignment:
Q  49 acaggagaaaaggaatcgaatctcatatt 77  Q
    |||||||||||||||||||||||||||||    
T  36430092 acaggagaaaaggaatcgaatctcatatt 36430120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 46278727 - 46278767
Alignment:
Q  99 agaacaggagaagaaggaatatgaatcttatcttttttaca 139  Q
    |||||||||||||||||||| ||| ||||||||||| ||||    
T  46278727 agaacaggagaagaaggaatctgagtcttatcttttgtaca 46278767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 35754153 - 35754300
Alignment:
Q  23 cagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattnnnnnnnngcacaagaatactagaacaggagaagaaggaatatga 122  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||        |||||||||||  |||||||||||||||||||| |||    
T  35754153 cagacttgaaaattcagaaattt-gaacagaagaaaaggaatcgaatctcatattaaaaaaaagcacaagaatataagaacaggagaagaaggaatctga 35754251  T
Q  123 atcttatcttttttacacaaatcaattacttacttctcttcctgcttgc 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35754252 atcttatcttttttacacaaatcaattacttacttctcttcctgcttgc 35754300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 23552455 - 23552337
Alignment:
Q  151 cttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggtttgcgattttcagtttgtccctgctgcc 250  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| || |||||||| ||||||||     
T  23552455 cttacttctcttcctgcttgcgatttgcgattctggtgttgccctttcttgcttcactctctttgttcaggtttgcga-ttacagtttgttcctgctgct 23552357  T
Q  251 tgccgtttgcgatttgcgat 270  Q
    ||||||||||||||||||||    
T  23552356 tgccgtttgcgatttgcgat 23552337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 32060493 - 32060440
Alignment:
Q  23 cagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 77  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32060493 cagacttgaaaattcagaaattt-gaacaggagaaaaggaatcgaatctcatatt 32060440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 35754296 - 35754367
Alignment:
Q  198 cttgcttcactctctttgttaaggtttgcgattttcagtttgtccctgctgcctgccgtttgcgatttgcgat 270  Q
    ||||||||| |||||||||| ||||||||||||| |||||||| |||||||| ||||||||||| ||||||||    
T  35754296 cttgcttcattctctttgttcaggtttgcgattt-cagtttgttcctgctgcttgccgtttgcggtttgcgat 35754367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 8082025 - 8082066
Alignment:
Q  141 aaatcaattacttacttctcttcctgcttgcgatttgtgatt 182  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  8082025 aaatcaatttcttacttctcttcctgcttgcgatttgcgatt 8082066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 8081986 - 8082014
Alignment:
Q  49 acaggagaaaaggaatcgaatctcatatt 77  Q
    |||||||||||||||||||||||||||||    
T  8081986 acaggagaaaaggaatcgaatctcatatt 8082014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 49 - 270
Target Start/End: Complemental strand, 2643636 - 2643430
Alignment:
Q  49 acaggagaaaaggaatcgaatctcatattnnnnnnnngcacaagaatactagaacaggagaagaaggaatatgaatcttatcttttttacacaaatcaat 148  Q
    ||||||||||| |||||||||||||||||        |||||||||||| |||||||||| ||||||||| |||||||||||||||||||              
T  2643636 acaggagaaaacgaatcgaatctcatattaaaaaa--gcacaagaatacaagaacaggaggagaaggaatctgaatcttatcttttttac---------- 2643549  T
Q  149 tacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggtttgcgattttcagtttgtccctgctg 248  Q
       |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||||||    
T  2643548 ---ttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctctttcttcaggtttgcga-tttcagtttgttcctgctg 2643453  T
Q  249 c-ctgccgtttgcgatttgcgat 270  Q
    |  ||||||||||||||||||||    
T  2643452 ctttgccgtttgcgatttgcgat 2643430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 120 - 231
Target Start/End: Original strand, 11016207 - 11016318
Alignment:
Q  120 tgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaa 219  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||| |    
T  11016207 tgaattttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgctgtttcttgcttcattctctttgttca 11016306  T
Q  220 ggtttgcgattt 231  Q
    ||||||||||||    
T  11016307 ggtttgcgattt 11016318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 14435446 - 14435405
Alignment:
Q  122 aatcttatcttttttacacaaatcaattacttacttctcttc 163  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14435446 aatcttatcttttttacacaaatcaattacttacttctcttc 14435405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 14435323 - 14435282
Alignment:
Q  160 cttcctgcttgcgatttgtgattctggtgttgccgtttcttg 201  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  14435323 cttcctgcttccgatttgcgattctggtgttgccgtttcttg 14435282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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