View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19382_high_7 (Length: 586)
Name: NF19382_high_7
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_7 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 16 - 582
Target Start/End: Original strand, 679053 - 679620
Alignment:
| Q |
16 |
cataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagccctatagagcagtcgactaggatgag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679053 |
cataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagccctatagagcagtcgactaggatgag |
679152 |
T |
|
| Q |
116 |
cactaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaacctcaccttttacctgtctaggaaaatactcaaatata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679153 |
cactaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaacctcaccttttacctgtctaggaaaatactcaaatata |
679252 |
T |
|
| Q |
216 |
cgcagcattcttctaattctaagaactagaaagnnnnnnnnnn-tgaaaatgaggcatataactatatttcaaactcactataagttttagaaagctaaa |
314 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
679253 |
cgcagcattcttctaattctcagaactagaaagaaaaaaaaaaatgaaaatgaggcatataactacatttcaaactcactataagttttagaaagctaaa |
679352 |
T |
|
| Q |
315 |
tgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaacatatagtgcgct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679353 |
tgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaacatatagtgcgct |
679452 |
T |
|
| Q |
415 |
gattttagaactgcagggtttggagaattgaaataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctcttttt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679453 |
gattttagaactgcagggtttggagaattgaaataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctcttttt |
679552 |
T |
|
| Q |
515 |
ctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatccaaagcttgatgatgtccat |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
679553 |
ctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatccaaagcttagtgatgtccat |
679620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 448
Target Start/End: Original strand, 750860 - 751290
Alignment:
| Q |
16 |
cataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagccctatagagcagtcgactaggatgag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
750860 |
cataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagccctatagagcagtcgactaggatgag |
750959 |
T |
|
| Q |
116 |
cactaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaacctcaccttttacctgtctaggaaaatactcaaatata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
750960 |
cactaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaacctcaccttttacctgtctaggaaaatactcaaatata |
751059 |
T |
|
| Q |
216 |
cgcagcattcttctaattctaagaactagaaagnnnnnnnnnntgaaaatgaggcatataactatatttcaaactcactataagttttagaaagctaaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751060 |
cgcagcattcttctaattctaagaactagaaa--aaaaataaatgaaaatgaggcatagaactatatttcaaactcactataagttttagaaagctaaat |
751157 |
T |
|
| Q |
316 |
gttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaacatatagtgcgctg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751158 |
gttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaacatatagtgcgctg |
751257 |
T |
|
| Q |
416 |
attttagaactgcagggtttggagaattgaaat |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
751258 |
attttagaactgcagggtttggagaattgaaat |
751290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 2632910 - 2632504
Alignment:
| Q |
19 |
aaagttaccacgagaataataa-catgttaatttctttagaaaattgatgactaacatgtatggtgggaagccctatagagcagtcgactaggatgagca |
117 |
Q |
| |
|
|||||||||| || | |||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
2632910 |
aaagttaccaagaaattaataaacatgttaatttgtttaaaaaattgatgactaacatgtatgg-gggaagctctacagagcagtcaactagaatgagca |
2632812 |
T |
|
| Q |
118 |
ctaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaacctcaccttttacctgtctaggaaaatactcaaatatacg |
217 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||||||||||| | |
|
|
| T |
2632811 |
ctaagccacatacccaagcactc----gcaaggataaacatgtttccattctgttaacaacctcaccttttcattatcttggaaaatactcaaatat--g |
2632718 |
T |
|
| Q |
218 |
cagcattcttctaattctaagaactagaaagnnnnnnnnnntgaaaatgaggcatataactatatttcaaactcactataagttttagaaagctaaatgt |
317 |
Q |
| |
|
|||||||||||||||||| | ||| ||||| |||||| |||||||| || | | || ||||||||||||||||| | ||||||||| |
|
|
| T |
2632717 |
cagcattcttctaattctcaaaacaagaaa---------aatgaaaacgaggcatagaattgca-ttaaaactcactataagtttcaaaaagctaaa--- |
2632631 |
T |
|
| Q |
318 |
tgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaaga----atctgatcttcacaaaacatatagtgcgc |
413 |
Q |
| |
|
| |||||| || | ||||||||||||| |||| ||||||||||| ||||| | |||| ||||||| | |||||||||||||||| | || || |
|
|
| T |
2632630 |
tatgaattattcacacacatgtgaagtgtatg--actatgataatacaaagaacgagtggtgaaagaaaagacctgatcttcacaaaac----aatgtgc |
2632537 |
T |
|
| Q |
414 |
tgattttagaactgcagggtttggagaattgaa |
446 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
2632536 |
tgattttaaaactgcagggtttggagaattgaa |
2632504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 446 - 582
Target Start/End: Original strand, 747402 - 747538
Alignment:
| Q |
446 |
aataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatc |
545 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
747402 |
aataatgtgggatgccctctattcttttccaataatcagcccccaaagtattaaaaaaaacctctttttctgaagaaacaacaacgaccttataattatc |
747501 |
T |
|
| Q |
546 |
aatgaaatgatcatatccaaagcttgatgatgtccat |
582 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
747502 |
aatgaaatgatcatatccaaagcttagtgatgtccat |
747538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 9564703 - 9564816
Alignment:
| Q |
16 |
cataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagccctatagagcagtcgactaggatgag |
115 |
Q |
| |
|
||||||||| ||| || | |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
9564703 |
cataaagttcccaagaaattaataaaatgttaatttctttagaaaatttatgactaacatgtatggagggaagctctatagagcagtcaactaggatgaa |
9564802 |
T |
|
| Q |
116 |
cactaagccacata |
129 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9564803 |
cactaagccacata |
9564816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 7317380 - 7317545
Alignment:
| Q |
16 |
cataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagccctatagagcagtcgactaggatgag |
115 |
Q |
| |
|
||||||||| ||| || | |||||||||||||| |||||||||| |||||||||||||||| || | |||||| || ||||| | | ||||||||||| |
|
|
| T |
7317380 |
cataaagttgccaagaaattaataacatgttaaattctttagaagattgatgactaacatgaatagagggaagttgtacagagcgggcaactaggatgag |
7317479 |
T |
|
| Q |
116 |
cactaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaacctcacct |
185 |
Q |
| |
|
|||||| ||| || ||||||||| |||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7317480 |
tactaagtcacctatccaagcact----gataatgataaacatgttgatattctgttaacaacctcacct |
7317545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 9564819 - 9564909
Alignment:
| Q |
156 |
catgttgacattctgttaacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattcttctaattctaagaactagaa |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||||||||||||| ||||| |||| |
|
|
| T |
9564819 |
catgttgacattctgttaacaacctcaccttttcactgtcttggaaaatactcaaatacatacagcattcttctaattctcagaaccagaa |
9564909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 453 - 569
Target Start/End: Original strand, 7324687 - 7324803
Alignment:
| Q |
453 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa |
552 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| | |||| ||||||||||||| ||||||| |||||||| ||| |
|
|
| T |
7324687 |
tgggatgtcctctattcttgtccaataatcagtccccaaagtattaacactaactttatttttggaagaaacaacaatgaccttatagttatcaattaaa |
7324786 |
T |
|
| Q |
553 |
tgatcatatccaaagct |
569 |
Q |
| |
|
||||| || |||||||| |
|
|
| T |
7324787 |
tgatcgtacccaaagct |
7324803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 455 - 582
Target Start/End: Complemental strand, 2501944 - 2501817
Alignment:
| Q |
455 |
ggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatg |
554 |
Q |
| |
|
||||| ||||||| || ||||||||||| ||||||||||||||| | ||| || ||||| ||||||||||| ||||||| |||||||||||||| |
|
|
| T |
2501944 |
ggatgtcctctatctttctccaataatcagtccccaaagtattaaccctaacttcattttcgtcagaaacaacaatgaccttataattatcaatgaaatg |
2501845 |
T |
|
| Q |
555 |
atcatatccaaagcttgatgatgtccat |
582 |
Q |
| |
|
|||||||||||||||| |||||||||| |
|
|
| T |
2501844 |
atcatatccaaagcttagtgatgtccat |
2501817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 453 - 570
Target Start/End: Complemental strand, 2491871 - 2491754
Alignment:
| Q |
453 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa |
552 |
Q |
| |
|
||||||| ||| |||||||||||||||||| ||||||||||| ||||| ||| || ||||| ||||||||| ||| ||||||| | |||||||||| |
|
|
| T |
2491871 |
tgggatgtccttgattcttgtccaataatcagtccccaaagtataaacactaacttcattttcggaagaaacaccaatgaccttataatcatcaatgaaa |
2491772 |
T |
|
| Q |
553 |
tgatcatatccaaagctt |
570 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
2491771 |
tgatcatacccaaagctt |
2491754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 450 - 570
Target Start/End: Original strand, 9594898 - 9595018
Alignment:
| Q |
450 |
atgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatg |
549 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||| || |||| |||| || | ||| ||||||| ||||||||| |
|
|
| T |
9594898 |
atgtgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcatttttggaagcaaaatcaatgaccttatacttatcaatg |
9594997 |
T |
|
| Q |
550 |
aaatgatcatatccaaagctt |
570 |
Q |
| |
|
||||||||||| || |||||| |
|
|
| T |
9594998 |
aaatgatcatacccgaagctt |
9595018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 453 - 566
Target Start/End: Original strand, 9566094 - 9566207
Alignment:
| Q |
453 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa |
552 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||| || |||| || ||||||| || | ||||| |||||||||||| |
|
|
| T |
9566094 |
tgggatgtcctctattcttgtccaataatcagtccccaaagtataaacactaacttcattttttgtagaaacagaaatgagcttataattatcaatgaaa |
9566193 |
T |
|
| Q |
553 |
tgatcatatccaaa |
566 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
9566194 |
tgatcatacccaaa |
9566207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 462 - 566
Target Start/End: Original strand, 7443269 - 7443373
Alignment:
| Q |
462 |
ctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatat |
561 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||||||| ||||||| | || ||||||| | ||||||| |||| |||||||||||||||||||| |
|
|
| T |
7443269 |
ctctattcttctccaataatcagtccccaaagcattaacaaaaacctcatatttggaagaaatagcaacaactttataattatcaatgaaatgatcatac |
7443368 |
T |
|
| Q |
562 |
ccaaa |
566 |
Q |
| |
|
||||| |
|
|
| T |
7443369 |
ccaaa |
7443373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 667996 - 668075
Alignment:
| Q |
35 |
taataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagccctatagagcagtcgactaggatga |
114 |
Q |
| |
|
|||||| ||||||| || ||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||| |
|
|
| T |
667996 |
taataaaatgttaaattgtttagaaaattgatgactaacatgtatggagggaagctctacagagcaggaaactaggatga |
668075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 453 - 560
Target Start/End: Original strand, 9562235 - 9562342
Alignment:
| Q |
453 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa |
552 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||||||||||| ||||| ||| || |||| | ||||||||||| ||||||| |||||||||||| |
|
|
| T |
9562235 |
tgggatgtcctctattctcttccaataatcagtccccaaagtataaacactaacttcatttttggtagaaacaacaatgaccttataattatcaatgaaa |
9562334 |
T |
|
| Q |
553 |
tgatcata |
560 |
Q |
| |
|
|||||||| |
|
|
| T |
9562335 |
tgatcata |
9562342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 570
Target Start/End: Complemental strand, 2474895 - 2474777
Alignment:
| Q |
453 |
tgggatgccctctattcttgtccaataatca-tcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaa |
551 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||| || |||| ||||||| |||| |||| | ||||||||||| |
|
|
| T |
2474895 |
tgggatgtcctctattcttgtccaataatcagtccttaaaagtattaacactaacttcatttttggaagaaaatacaatggccttgtaattatcaatgaa |
2474796 |
T |
|
| Q |
552 |
atgatcatatccaaagctt |
570 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2474795 |
atgatcatatccaaagctt |
2474777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 461 - 570
Target Start/End: Original strand, 754888 - 754997
Alignment:
| Q |
461 |
cctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcata |
560 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||||||| || |||| || ||||||| || ||||| | |||| ||||||||||||||| |
|
|
| T |
754888 |
cctctattcttgtccaataatcagtccccaatgtataaacacaaacttcattttttgtagaaacagaaatgaccttgtaattatgaatgaaatgatcata |
754987 |
T |
|
| Q |
561 |
tccaaagctt |
570 |
Q |
| |
|
||||||||| |
|
|
| T |
754988 |
cccaaagctt |
754997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 570
Target Start/End: Original strand, 2644633 - 2644738
Alignment:
| Q |
465 |
tattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatcca |
564 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| | ||| || ||||| |||||||| || ||||||| ||||||| ||| |||||||||||| |
|
|
| T |
2644633 |
tattcttgtccaataatcagtccccaaagtattaaccctaacttcattttcgtcagaaacaataatgaccttataattatcaacgaagtgatcatatcca |
2644732 |
T |
|
| Q |
565 |
aagctt |
570 |
Q |
| |
|
|||||| |
|
|
| T |
2644733 |
aagctt |
2644738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 570
Target Start/End: Original strand, 2659420 - 2659525
Alignment:
| Q |
465 |
tattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatcca |
564 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| || | |||||| ||||| |||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
2659420 |
tattcttctccaataatcagtccccaaagtattaacactaatcacttttttgaaagaatgggcaacaaccttataattatcaataaaatgatcatatcca |
2659519 |
T |
|
| Q |
565 |
aagctt |
570 |
Q |
| |
|
|||||| |
|
|
| T |
2659520 |
aagctt |
2659525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 7339775 - 7339829
Alignment:
| Q |
35 |
taataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagc |
89 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
7339775 |
taataaaatgttactttctttagaaaattgatgactaatatgtatggagggaagc |
7339829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 473 - 570
Target Start/End: Original strand, 7334560 - 7334657
Alignment:
| Q |
473 |
tccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatccaaagctt |
570 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||| | ||||| | ||||||| |||| ||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
7334560 |
tccaataatcagttcccaaagtataaacactaacttttttttttacagaaacagcaacgaccttataattatcaatgaaatgatcatatccgaagctt |
7334657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 570
Target Start/End: Complemental strand, 2631138 - 2631014
Alignment:
| Q |
446 |
aataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatc |
545 |
Q |
| |
|
|||||| ||||||| | ||||||||| ||||||||||| ||| ||||||| || | |||| || |||| ||||||||| ||| ||||||| ||||| |
|
|
| T |
2631138 |
aataatatgggatgtcgtctattcttttccaataatcagtccctaaagtataaagaaaaacttcatttttggaagaaacagcaatgaccttatacttatc |
2631039 |
T |
|
| Q |
546 |
aatgaaatgatcatatccaaagctt |
570 |
Q |
| |
|
||||||| |||||| ||||||||| |
|
|
| T |
2631038 |
aatgaaacaatcatacccaaagctt |
2631014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 2642564 - 2642618
Alignment:
| Q |
17 |
ataaagttaccacgagaataataacatgttaatttctttagaaaattgatgacta |
71 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
2642564 |
ataaagttaccaagaaattaataacatgttaatttctttagaaaactaatgacta |
2642618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 570
Target Start/End: Complemental strand, 2476426 - 2476309
Alignment:
| Q |
453 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa |
552 |
Q |
| |
|
||||||| ||| |||||||||||||||||| ||||||||||||||||| ||| || |||| |||||||| || ||||| | |||||||| || |
|
|
| T |
2476426 |
tgggatgtcctgcattcttgtccaataatcagtccccaaagtattaacactaacttcgtttttgtcagaaacaagaatgaccttgtagttatcaatagaa |
2476327 |
T |
|
| Q |
553 |
tgatcatatccaaagctt |
570 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
2476326 |
tgatcatacccaaagctt |
2476309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 2650084 - 2650136
Alignment:
| Q |
16 |
cataaagttaccacgagaataataacatgttaatttctttagaaaattgatga |
68 |
Q |
| |
|
||||||||||||| || | ||||||||||| || ||||||||||||||||||| |
|
|
| T |
2650084 |
cataaagttaccaagaaattaataacatgtaaacttctttagaaaattgatga |
2650136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 1525 - 1360
Alignment:
| Q |
20 |
aagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagccctatagagcagtc-gactaggatgagcac |
118 |
Q |
| |
|
||||||||| || | |||||| ||||||| ||||||||||||||||| ||||||| |||| | ||||||| ||| | || | | |||||||||||||| |
|
|
| T |
1525 |
aagttaccaagaaattaataatatgttaaattctttagaaaattgattactaacaggtatagagggaagctctagaaagtgggcaaactaggatgagcac |
1426 |
T |
|
| Q |
119 |
taagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaacctcacctttt |
188 |
Q |
| |
|
||||||||||| |||| || | ||| |||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
1425 |
taagccacatatgcaagtaccc----gtaatgataaatatgttgacattctgttaacaaccacacctttt |
1360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 2289907 - 2289947
Alignment:
| Q |
37 |
ataacatgttaatttctttagaaaattgatgactaacatgt |
77 |
Q |
| |
|
|||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
2289907 |
ataatatgttaatttctttagaaaattaattactaacatgt |
2289947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University