View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_71 (Length: 263)
Name: NF19382_high_71
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_71 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 33596287 - 33596040
Alignment:
| Q |
8 |
atagtgtcagccattttgttcttcgggaaatgaactatgataatccatagttcggacgggaggtaagtaaaatttagtcaatgattgttacaaccagggt |
107 |
Q |
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| T |
33596287 |
atagtgtcagccattttgttcttcgggaaatgaactatgataatccatagttcggacgggaggtaagtaaaatctagtcaatgattgttacaaccagggt |
33596188 |
T |
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| Q |
108 |
tcgaacttggtacttgcaatcgacttgaccttcactgaacctcattaatcacttgaatagaaccatttaatttcagttagagtatattcaaatgctaaaa |
207 |
Q |
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| T |
33596187 |
tcgaacttggtacttgcaatcgacttgaccttcaccgaacctcattaatcacttgaatagaaccatttaatttcagttagagtatattcaaatgctaaaa |
33596088 |
T |
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| Q |
208 |
gttttaggtgtttattttttactttgcagatcaaaatggagatgatgt |
255 |
Q |
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| T |
33596087 |
gttttaggtgtttattttttactttgcagatcaaaatggagatgatgt |
33596040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 33583055 - 33582856
Alignment:
| Q |
9 |
tagtgtcagccattttgttcttcgggaaatgaactatgataatccatagttcggacgggaggtaagtaaaatttagtcaatgattgttacaaccagggtt |
108 |
Q |
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| T |
33583055 |
tagtgccagccgttttgttcttcggaaaatgaacttttatgattcgtagttcagacaggaggtaagtaaaatttagtcaataattatttcaaccaggatt |
33582956 |
T |
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| Q |
109 |
cgaacttggtacttgcaatcgacttgaccttcactgaacc---tcattaatcacttgaatagaaccatttaatttcagttagagtatattcaaatgctaa |
205 |
Q |
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| T |
33582955 |
tgtacttggtacttccaattgacttgacctttcccgaacctcatcattaatcactcaaattgaaccatttaatttcagttagaatatattcaaatgctaa |
33582856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 37230466 - 37230585
Alignment:
| Q |
86 |
caatgattgttacaaccagggttcgaacttggtacttgcaatcgacttgaccttcactgaacctcattaatcacttgaatagaaccatttaatttcagtt |
185 |
Q |
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| T |
37230466 |
caatgattgtaacaaccaggttttgaacttagtacttccaatcaacttgaccttcaccggacctcattgaccactcgagtcgaaccatttaatttcagtt |
37230565 |
T |
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| Q |
186 |
agagtatattcaaatgctaa |
205 |
Q |
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| T |
37230566 |
agagtatatttaaatgctaa |
37230585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 37237386 - 37237502
Alignment:
| Q |
89 |
tgattgttacaaccagggttcgaacttggtacttgcaatcgacttgaccttcactgaacctcattaatcacttgaatagaaccatttaatttcagttaga |
188 |
Q |
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| T |
37237386 |
tgattgtaacaaccaggctttgaacttggtacttccaatcaacttgaccttcaccagacctcattgaccacttgagtcgaaccctttaatttcagttaga |
37237485 |
T |
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| Q |
189 |
gtatattcaaatgctaa |
205 |
Q |
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| T |
37237486 |
gtatatttaaatgctaa |
37237502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 9026731 - 9026695
Alignment:
| Q |
42 |
ctatgataatccatagttcggacgggaggtaagtaaa |
78 |
Q |
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| T |
9026731 |
ctatgataattcagagttcggacgggaggtaagtaaa |
9026695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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