View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_8 (Length: 569)
Name: NF19382_high_8
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 51350167 - 51350733
Alignment:
| Q |
1 |
agtgacattgattttattagagctgcaaagtatagtttctgtcaaattcacagaagcacaccgcgattctatcaaactcacc-taaatgcgaatgtgcac |
99 |
Q |
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| T |
51350167 |
agtgacattgattttattagagctgcaaagtatagtttctgtcaaattcacagaagcacaccgcgattctatcaaattcaccataaatgcgaatgtgcac |
51350266 |
T |
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| Q |
100 |
tcatgatgatgatggtgaatatattactgcaattgtcaatttagcacagtagaatcttgatgcttgtagtaaaaacaaaattaataagatatctctgcat |
199 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350267 |
tcatagtgat---ggtgaatatattactgcaattgtcaatttagcacagtagaatcttgatgcttgtagtaaaaacaaaattaataagatatctctgcat |
51350363 |
T |
|
| Q |
200 |
taattgatatctaccacttgtgataatctatactggtatgctaataatgtagtactggtattattgaatataaaatagaaataactacatttactccaac |
299 |
Q |
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| T |
51350364 |
taattgatatctaccacttgtgataatctatactggtatgctaataatgtagtactggtattattgaatataaaatagaaataactacatttactccaac |
51350463 |
T |
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| Q |
300 |
ctgaatttaaaattgaaattggagagacttatgactctatttcaccctccaattcttgaccgtgacaaccagcaccttcaagaacaattacaaaataata |
399 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51350464 |
ctgaatttaaaattgaaattgaagagacttatgactctatttcaccctccaattcttgactgtgacaaccagcaccttcaagaacaattacaaaataata |
51350563 |
T |
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| Q |
400 |
agtatatg----------------------attgtcaaaatactaaaactctcacacgttcgaaaacgataattatttgagaaaattgaatgtaagtatg |
477 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350564 |
agtatatgaagcactgacagagatacggacattgtcacaatactaaaactctcacacgttcgaaaacgataattatttgagaaaattgaatgtaagtatg |
51350663 |
T |
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| Q |
478 |
tgtcatgtcggtgttcaacacacctgacacacattcaacttgaatagctatatataaaacatatggaggc |
547 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350664 |
tgtcatgtcggtgttcaacacatctgacacacattcaacttgaatagctatatataaaacatatggaggc |
51350733 |
T |
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