View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_high_81 (Length: 250)

Name: NF19382_high_81
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_high_81
NF19382_high_81
[»] chr1 (6 HSPs)
chr1 (1-232)||(48591010-48591241)
chr1 (1-232)||(48600705-48600936)
chr1 (140-221)||(35109743-35109825)
chr1 (151-229)||(10996771-10996849)
chr1 (150-222)||(17345733-17345805)
chr1 (150-222)||(50521317-50521389)
[»] chr6 (4 HSPs)
chr6 (150-229)||(1115308-1115387)
chr6 (150-222)||(33721771-33721842)
chr6 (152-229)||(98972-99050)
chr6 (150-219)||(9036093-9036162)
[»] scaffold0076 (1 HSPs)
scaffold0076 (150-222)||(16193-16265)
[»] chr2 (4 HSPs)
chr2 (150-222)||(16388688-16388759)
chr2 (150-229)||(16388259-16388337)
chr2 (152-222)||(28770998-28771068)
chr2 (153-221)||(18674621-18674684)
[»] chr5 (2 HSPs)
chr5 (148-229)||(30899666-30899747)
chr5 (150-219)||(34842415-34842484)
[»] chr4 (5 HSPs)
chr4 (150-228)||(873731-873809)
chr4 (148-194)||(34670937-34670983)
chr4 (196-229)||(8114940-8114973)
chr4 (150-195)||(22660079-22660124)
chr4 (149-222)||(37781672-37781745)
[»] chr8 (3 HSPs)
chr8 (170-221)||(5990774-5990825)
chr8 (146-197)||(8863876-8863927)
chr8 (150-221)||(7493283-7493352)
[»] chr7 (2 HSPs)
chr7 (178-219)||(8140952-8140993)
chr7 (150-229)||(5817482-5817559)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 48591241 - 48591010
Alignment:
Q  1 caaatgaaaatgaaccgcagaaacatatataccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaaaatgatgttcgaactattc 100  Q
    ||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48591241 caaatgaaaatgagccgtagaaacgtatgtaccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaatatgatgttcgaactattc 48591142  T
Q  101 tttttagggaagtgagtgatgttagaatattttattatataattatatgtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggag 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||| |||||||||| ||    
T  48591141 tttttaggggagtgagtgatgttagaatattttattatataattatatgtgttgtgaattcaaataaataatcacatcaataaaacttagatgtgtgaag 48591042  T
Q  201 taaaagaagtagtaatcaatgaacaaagttgt 232  Q
    |||||||| |||||||||||||||||||||||    
T  48591041 taaaagaaatagtaatcaatgaacaaagttgt 48591010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 48600936 - 48600705
Alignment:
Q  1 caaatgaaaatgaaccgcagaaacatatataccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaaaatgatgttcgaactattc 100  Q
    ||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48600936 caaatgaaaatgagccgtagaaacgtatgtaccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaatatgatgttcgaactattc 48600837  T
Q  101 tttttagggaagtgagtgatgttagaatattttattatataattatatgtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggag 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||| |||||||||| ||    
T  48600836 tttttaggggagtgagtgatgttagaatattttattatataattatatgtgttgtgaattcaaataaataatcacatcaataaaacttagatgtgtgaag 48600737  T
Q  201 taaaagaagtagtaatcaatgaacaaagttgt 232  Q
    |||||||| |||||||||||||||||||||||    
T  48600736 taaaagaaatagtaatcaatgaacaaagttgt 48600705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 35109825 - 35109743
Alignment:
Q  140 taattatatgtgttgtgaattggaacaaa-taatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatg 221  Q
    ||||||||| ||| ||||||| ||||||| |||||||| ||||||||| ||||||||| ||| ||| ||||||||||||||||    
T  35109825 taattatatctgtagtgaattcgaacaaaataatcacaccaataaaacttagatgtgtagaggaaaggaagtagtaatcaatg 35109743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 10996771 - 10996849
Alignment:
Q  151 gttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 229  Q
    |||||||||| ||||||| ||||||| ||||||||| || || ||| |||||||  ||||||||||||||||| |||||    
T  10996771 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtagagtaaagaaagtagtaatcaatgaataaagt 10996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 17345805 - 17345733
Alignment:
Q  150 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 222  Q
    ||||||||||| | ||||  || |||| |||| ||||  |||||||||||| ||| |||||||||||||||||    
T  17345805 tgttgtgaattcggacaagaaaccacaccaatgaaacaaagatgtgtggagcaaaggaagtagtaatcaatga 17345733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 50521389 - 50521317
Alignment:
Q  150 tgttgtgaattggaacaaataatcacatcaataaaaccta--gatgtgtggagtaaaagaagtagtaatcaatga 222  Q
    ||||||||||| | |||||  |||||||||||||||  ||  ||||||||||||||| ||||| |||||||||||    
T  50521389 tgttgtgaattcggacaaa--atcacatcaataaaaaataaagatgtgtggagtaaaggaagtggtaatcaatga 50521317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 1115387 - 1115308
Alignment:
Q  150 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 229  Q
    ||||||||||| || ||||||||| || ||||||||| ||||| | ||||||||||||||||||||||||||| ||||||    
T  1115387 tgttgtgaatttgagcaaataatcgcaccaataaaacttagatatatggagtaaaagaagtagtaatcaatgagcaaagt 1115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 33721842 - 33721771
Alignment:
Q  150 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 222  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||  ||| |||||||||||| ||||    
T  33721842 tgttgtgaatttgaacaaataatcacatcaataaaacc-agatgtgtggaacaaaggaagtagtaatcgatga 33721771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 98972 - 99050
Alignment:
Q  152 ttgtgaattggaacaaataa-tcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 229  Q
    ||||||||| || ||||||| ||||  ||||||||| || | |||||||||||| ||||||||||||||||| ||||||    
T  98972 ttgtgaattcgagcaaataaatcacgccaataaaacttaaacgtgtggagtaaaggaagtagtaatcaatgagcaaagt 99050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 9036093 - 9036162
Alignment:
Q  150 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaa 219  Q
    ||||||||||| || |||||||| ||| ||||||| | ||||| ||||||| ||| ||||||||||||||    
T  9036093 tgttgtgaatttgatcaaataattacaccaataaatcttagatatgtggagcaaatgaagtagtaatcaa 9036162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 16265 - 16193
Alignment:
Q  150 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 222  Q
    ||||||||||| |||| |||||| ||| ||||||||| ||||||||| ||| ||| |||||||||||||||||    
T  16265 tgttgtgaatttgaactaataattacaccaataaaacttagatgtgtcgagcaaaggaagtagtaatcaatga 16193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 16388759 - 16388688
Alignment:
Q  150 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 222  Q
    |||||||||||  ||||||||||||||||||| |||| ||||||||||||| ||||  |||||||||||||||    
T  16388759 tgttgtgaattcaaacaaataatcacatcaat-aaacttagatgtgtggagcaaaaatagtagtaatcaatga 16388688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 16388259 - 16388337
Alignment:
Q  150 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 229  Q
    ||||||||||| ||||||||||||||| | ||||| | ||||||||||||| |||  ||||||||||||||||| |||||    
T  16388259 tgttgtgaattcgaacaaataatcacaccgataaa-cttagatgtgtggagcaaagaaagtagtaatcaatgaataaagt 16388337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 28771068 - 28770998
Alignment:
Q  152 ttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 222  Q
    ||||||||| ||||||||||||| ||||||||||  |||| |||||| | ||| |||||||||||||||||    
T  28771068 ttgtgaatttgaacaaataatcatatcaataaaatttagacgtgtggtgcaaatgaagtagtaatcaatga 28770998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 18674684 - 18674621
Alignment:
Q  153 tgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatg 221  Q
    ||||||||  ||||||||||||||||||||     |||||||||| ||||||  |||||||||||||||    
T  18674684 tgtgaattcaaacaaataatcacatcaata-----tagatgtgtgaagtaaagaaagtagtaatcaatg 18674621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 30899666 - 30899747
Alignment:
Q  148 tgtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 229  Q
    |||||||||||||  |||||  || || ||||||||||| |||||||||||||  |||||| ||||||||||||| ||||||    
T  30899666 tgtgttgtgaattcaaacaataaaacatatcaataaaacttagatgtgtggagctaaagaaatagtaatcaatgagcaaagt 30899747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 34842415 - 34842484
Alignment:
Q  150 tgttgtgaattggaacaa-ataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaa 219  Q
    ||||||||||| |||||| | ||||||| ||||||| | ||||||||||||||||| ||||||||||||||    
T  34842415 tgttgtgaattagaacaataaaatcacaccaataaa-cttagatgtgtggagtaaaggaagtagtaatcaa 34842484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 873809 - 873731
Alignment:
Q  150 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaag 228  Q
    |||||||||||  |||||||||| ||| ||||||||| ||||||| | ||||||  ||||| ||||||||||| |||||    
T  873809 tgttgtgaatttaaacaaataattacaccaataaaacttagatgtatagagtaatggaagttgtaatcaatgagcaaag 873731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 34670983 - 34670937
Alignment:
Q  148 tgtgttgtgaattggaacaaataatcacatcaataaaacctagatgt 194  Q
    ||||||||||||| ||||||||||||||| ||||||||  |||||||    
T  34670983 tgtgttgtgaattcgaacaaataatcacaccaataaaatttagatgt 34670937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 8114973 - 8114940
Alignment:
Q  196 tggagtaaaagaagtagtaatcaatgaacaaagt 229  Q
    ||||||||||||||||||||||||||| ||||||    
T  8114973 tggagtaaaagaagtagtaatcaatgaccaaagt 8114940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 22660124 - 22660079
Alignment:
Q  150 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtg 195  Q
    ||||||||||| ||||||||||||||| |||| |||| ||||||||    
T  22660124 tgttgtgaattcgaacaaataatcacaccaatgaaacttagatgtg 22660079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 37781672 - 37781745
Alignment:
Q  149 gtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 222  Q
    ||||||||||||  |||||||||| | |  |||||||| |||| |||||||| |||||||||||| || |||||    
T  37781672 gtgttgtgaattcaaacaaataattataataataaaacttagaagtgtggagcaaaagaagtagtcattaatga 37781745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 5990825 - 5990774
Alignment:
Q  170 aatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatg 221  Q
    |||||||||||||||||  ||||||| |||| ||| ||||||||||||||||    
T  5990825 aatcacatcaataaaacaaagatgtgcggagcaaaggaagtagtaatcaatg 5990774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 8863927 - 8863876
Alignment:
Q  146 tatgtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtg 197  Q
    |||||| |||||||| ||||||||||||||| ||||||||| || |||||||    
T  8863927 tatgtgctgtgaattcgaacaaataatcacaccaataaaacttaaatgtgtg 8863876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 7493352 - 7493283
Alignment:
Q  150 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatg 221  Q
    ||||||||||| | |||||  |||||| |||||||||   ||||||||||| ||| ||||||||||||||||    
T  7493352 tgttgtgaattcggacaaa--atcacaccaataaaactatgatgtgtggagcaaaggaagtagtaatcaatg 7493283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 8140993 - 8140952
Alignment:
Q  178 caataaaacctagatgtgtggagtaaaagaagtagtaatcaa 219  Q
    |||||||||  |||||||||||| ||||||||||||||||||    
T  8140993 caataaaactaagatgtgtggagcaaaagaagtagtaatcaa 8140952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 5817559 - 5817482
Alignment:
Q  150 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 229  Q
    ||||||||||| | |||||  ||||||||||||||||  ||||||||| || |||  ||||| ||||||||| |||||||    
T  5817559 tgttgtgaattcgtacaaa--atcacatcaataaaacaaagatgtgtgaagcaaagtaagtattaatcaatggacaaagt 5817482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University