View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_high_85 (Length: 242)

Name: NF19382_high_85
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_high_85
NF19382_high_85
[»] chr4 (2 HSPs)
chr4 (13-222)||(14176617-14176826)
chr4 (13-222)||(28609050-28609259)
[»] chr8 (1 HSPs)
chr8 (13-222)||(12933347-12933556)
[»] chr7 (1 HSPs)
chr7 (13-222)||(15299137-15299346)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 14176617 - 14176826
Alignment:
Q  13 tgaagatggtgatgatgaagatgttcaggatggagaacaatccccaacatctcagctcaggagatcaagcagagatcatcatccatctaccaggtaccct 112  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14176617 tgaagatggtgatgatgaagatgttcaagatggagagcaatccacaacatctcatctcaggagatcaagcagagatcatcatccatctaccaggtaccct 14176716  T
Q  113 agttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatgaagttcaaactcataaggataaaatccaatggatgaaagcaatgcaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14176717 agttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatgaagttcaaactcataaggataaaatccaatggatgaaagcaatgcaag 14176816  T
Q  213 aagagctgga 222  Q
    ||||| ||||    
T  14176817 aagagatgga 14176826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 28609259 - 28609050
Alignment:
Q  13 tgaagatggtgatgatgaagatgttcaggatggagaacaatccccaacatctcagctcaggagatcaagcagagatcatcatccatctaccaggtaccct 112  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  28609259 tgaagatggtgatgatgaagatgttcaagatggagagcaatccacaacatctcatctcaggagattaagcagagatcatcatccatctaccaggtaccct 28609160  T
Q  113 agttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatgaagttcaaactcataaggataaaatccaatggatgaaagcaatgcaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28609159 agttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatgaagttcaaactcataaggataaaatccaatggatgaaagcaatgcaag 28609060  T
Q  213 aagagctgga 222  Q
    ||||| ||||    
T  28609059 aagagatgga 28609050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 12933347 - 12933556
Alignment:
Q  13 tgaagatggtgatgatgaagatgttcaggatggagaacaatccccaacatctcagctcaggagatcaagcagagatcatcatccatctaccaggtaccct 112  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12933347 tgaagatggtgatgatgaagatgttcaagatggagagcaatccacaacatctcatctcaggagatcaagcagagatcatcatccatctaccaggtaccct 12933446  T
Q  113 agttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatgaagttcaaactcataaggataaaatccaatggatgaaagcaatgcaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12933447 agttcggagtacatcctcatcactgatgagggggagccggacagtttcgatgaagttcaaactcataaagataaaatccaatggatgaaagcaatgcaag 12933546  T
Q  213 aagagctgga 222  Q
    ||||| ||||    
T  12933547 aagagatgga 12933556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 15299137 - 15299346
Alignment:
Q  13 tgaagatggtgatgatgaagatgttcaggatggagaacaatccccaacatctcagctcaggagatcaagcagagatcatcatccatctaccaggtaccct 112  Q
    ||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15299137 tgaagatggtgatgaggaagatgttcaggatggagagcaatgcccaacatctcagctcaagagatcaagcagagatcatcatccatctaccaggtaccct 15299236  T
Q  113 agttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatgaagttcaaactcataaggataaaatccaatggatgaaagcaatgcaag 212  Q
    |||| ||||||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15299237 agtttggagtacattctcatcactgttgagggggagccgaaaagttttgatgaagttcaaactcataaggataaaatccaatggatgaaagcaatgtaag 15299336  T
Q  213 aagagctgga 222  Q
    ||||| ||||    
T  15299337 aagagatgga 15299346  T

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