View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_87 (Length: 237)
Name: NF19382_high_87
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_87 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41415261 - 41415481
Alignment:
| Q |
1 |
tctgctaagtattgaccatctattcatcacaggtagaaaatatgatacttgacacaatagcttaacacttttaaggattgagatcatagctaaattaaag |
100 |
Q |
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| T |
41415261 |
tctgctaagtattgaccatcaattcatcacaggtagaaaatatgatacttgacacaatagcttaacacttttaaggattgagatcatagctaaattaaag |
41415360 |
T |
|
| Q |
101 |
taatatgttattacctgatttccaaatccaatgccaatgccgagcataatacggccaaagatcaacattgagaggttaatagctgaagcatttacagctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41415361 |
taatatgttattacctgatttccaaatccaatgccaatgccgagcataatacggccaaagatcaacattgagaggttaatagctgaagcattcacagctg |
41415460 |
T |
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| Q |
201 |
atccaattagaaagctaatac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
41415461 |
atccaattagaaagctaatac |
41415481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 36294948 - 36295157
Alignment:
| Q |
1 |
tctgctaagtattgaccatctattcatcacaggtagaaaatatgatacttgacacaatagcttaaca---cttttaaggattgagatcatagctaaatta |
97 |
Q |
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||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||| |||| |||| ||||||| | |||||| || |||| |
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| T |
36294948 |
tctgctaagtattgatcatgaattcatcataggtagg-----tgatacttgacacaatagcccaacaacactttcaaggattta--tcatagatagatta |
36295040 |
T |
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| Q |
98 |
aagtaatatgttattacctgatttccaaatccaatgccaatgccgagcataatacggccaaagatcaacattgagaggttaatagctgaagcatttacag |
197 |
Q |
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|| |||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| ||||| |||||||| |||||||||||| | || |
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| T |
36295041 |
gagaaatatgctattacctgatttccaaatccaataccaatgccgagcataacacggccgaagatcagcattgtgaggttaacagctgaagcattcagag |
36295140 |
T |
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| Q |
198 |
ctgatccaattagaaag |
214 |
Q |
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|||||||||| |||||| |
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| T |
36295141 |
ctgatccaatcagaaag |
36295157 |
T |
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