View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_high_89 (Length: 233)

Name: NF19382_high_89
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_high_89
NF19382_high_89
[»] chr1 (16 HSPs)
chr1 (60-233)||(49846534-49846707)
chr1 (1-42)||(18404439-18404480)
chr1 (1-39)||(40214988-40215026)
chr1 (1-42)||(16045825-16045866)
chr1 (1-41)||(19015402-19015442)
chr1 (1-41)||(25463674-25463714)
chr1 (1-39)||(9910320-9910358)
chr1 (1-39)||(32000294-32000332)
chr1 (2-40)||(34519757-34519795)
chr1 (1-39)||(36966735-36966773)
chr1 (1-39)||(37821861-37821899)
chr1 (1-39)||(44094698-44094736)
chr1 (2-40)||(51620979-51621017)
chr1 (1-42)||(3559614-3559655)
chr1 (1-42)||(40273699-40273740)
chr1 (1-41)||(25973412-25973452)
[»] chr3 (17 HSPs)
chr3 (1-44)||(2754712-2754755)
chr3 (1-42)||(11347265-11347306)
chr3 (1-41)||(3574554-3574594)
chr3 (1-44)||(6041879-6041922)
chr3 (1-44)||(34482937-34482980)
chr3 (1-44)||(37217080-37217123)
chr3 (1-40)||(42297352-42297391)
chr3 (1-39)||(3456064-3456102)
chr3 (1-39)||(48160905-48160943)
chr3 (1-41)||(3137441-3137481)
chr3 (1-41)||(24343545-24343585)
chr3 (1-41)||(33113791-33113831)
chr3 (1-39)||(8320611-8320649)
chr3 (1-39)||(30385011-30385049)
chr3 (2-36)||(40327878-40327912)
chr3 (1-42)||(37522050-37522091)
chr3 (8-41)||(47402630-47402663)
[»] chr8 (18 HSPs)
chr8 (1-43)||(1645992-1646034)
chr8 (1-43)||(32064741-32064783)
chr8 (1-41)||(15187558-15187598)
chr8 (1-43)||(17841877-17841919)
chr8 (1-39)||(24211580-24211618)
chr8 (1-39)||(32393858-32393896)
chr8 (1-39)||(34665382-34665420)
chr8 (1-42)||(40780156-40780197)
chr8 (1-46)||(42755069-42755114)
chr8 (1-41)||(26042143-26042183)
chr8 (1-44)||(31347809-31347852)
chr8 (1-39)||(20091828-20091866)
chr8 (1-39)||(35353041-35353079)
chr8 (1-38)||(14128865-14128902)
chr8 (3-40)||(41819807-41819844)
chr8 (2-38)||(27782145-27782181)
chr8 (1-41)||(37986082-37986122)
chr8 (1-45)||(39772828-39772872)
[»] chr5 (13 HSPs)
chr5 (1-42)||(2477633-2477674)
chr5 (1-41)||(6043538-6043578)
chr5 (1-40)||(3362777-3362816)
chr5 (1-40)||(38899753-38899792)
chr5 (1-39)||(11361158-11361196)
chr5 (1-39)||(12850801-12850839)
chr5 (1-42)||(4892199-4892240)
chr5 (1-41)||(14138666-14138706)
chr5 (1-39)||(22913081-22913119)
chr5 (1-39)||(25398238-25398276)
chr5 (1-39)||(33584356-33584394)
chr5 (1-42)||(8145372-8145413)
chr5 (2-39)||(12614761-12614798)
[»] chr4 (17 HSPs)
chr4 (1-42)||(10442816-10442857)
chr4 (1-45)||(4751440-4751484)
chr4 (1-40)||(31078846-31078885)
chr4 (1-40)||(33530715-33530754)
chr4 (1-39)||(2624837-2624875)
chr4 (1-43)||(21802349-21802391)
chr4 (1-39)||(22199261-22199299)
chr4 (1-39)||(36072947-36072985)
chr4 (1-39)||(49387915-49387953)
chr4 (1-38)||(7745139-7745176)
chr4 (1-42)||(24128236-24128277)
chr4 (1-42)||(24392664-24392705)
chr4 (1-42)||(47290063-47290104)
chr4 (1-45)||(23964492-23964536)
chr4 (1-42)||(44893423-44893464)
chr4 (1-41)||(36073348-36073388)
chr4 (1-41)||(50156605-50156645)
[»] chr2 (10 HSPs)
chr2 (2-43)||(9293604-9293645)
chr2 (1-40)||(35160756-35160795)
chr2 (1-39)||(21936081-21936119)
chr2 (1-38)||(10661888-10661925)
chr2 (1-42)||(13354843-13354884)
chr2 (1-41)||(23268089-23268129)
chr2 (1-40)||(7475535-7475574)
chr2 (1-48)||(43330903-43330950)
chr2 (2-40)||(14941394-14941432)
chr2 (1-39)||(33380207-33380245)
[»] chr7 (11 HSPs)
chr7 (1-41)||(15329271-15329311)
chr7 (1-41)||(45637710-45637750)
chr7 (1-40)||(15577877-15577916)
chr7 (1-39)||(3961979-3962017)
chr7 (1-39)||(4974762-4974800)
chr7 (1-39)||(24394972-24395010)
chr7 (1-39)||(42611811-42611849)
chr7 (1-39)||(48880954-48880992)
chr7 (1-41)||(37477107-37477147)
chr7 (1-39)||(20010124-20010162)
chr7 (1-39)||(34482835-34482873)
[»] chr6 (11 HSPs)
chr6 (1-41)||(6127273-6127313)
chr6 (1-41)||(23291111-23291151)
chr6 (1-41)||(28675146-28675186)
chr6 (1-40)||(33695354-33695393)
chr6 (1-40)||(33696695-33696734)
chr6 (1-39)||(17705492-17705530)
chr6 (1-42)||(18365600-18365641)
chr6 (1-42)||(18370864-18370905)
chr6 (1-39)||(17176048-17176086)
chr6 (1-39)||(25986930-25986968)
chr6 (4-36)||(8515755-8515787)
[»] scaffold0178 (1 HSPs)
scaffold0178 (1-39)||(11621-11659)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-43)||(41007-41049)
[»] scaffold0471 (1 HSPs)
scaffold0471 (1-42)||(12839-12880)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-42)||(4393-4434)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-39)||(47850-47888)
[»] scaffold0665 (1 HSPs)
scaffold0665 (1-38)||(3069-3106)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 60 - 233
Target Start/End: Original strand, 49846534 - 49846707
Alignment:
Q  60 catccaaaatcttattgaaattaaaggaggaaagatatttgcttctaatacaccccacatggttcggatgatttttcattcttctgtaatgcggtttgta 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  49846534 catccaaaatcttattgaaattaaaggaggaaagatatttgcttctaatacaccccacatggttcggatgatttttcattcttctgtaatgcggtttgtg 49846633  T
Q  160 aacttgcagggtgttttgttnnnnnnnggaatctatgaatctattaaaagaagttgtgattgaaaagttctaat 233  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  49846634 aacttgcagggtgttttgttaaaaaaaggaatctatgaatctattaaaagaagttgtgattgaaaagttctaat 49846707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18404480 - 18404439
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  18404480 ttttcttgataaaatctttcttgatatatagcattgctcttt 18404439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 40215026 - 40214988
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  40215026 ttttcttgataaaatctttcttgatatatagcattgctc 40214988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16045825 - 16045866
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    |||||||||||||||||||||||| |||||||||| ||||||    
T  16045825 ttttcttgataaaatctttcttgatatatagcattactcttt 16045866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19015442 - 19015402
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  19015442 ttttcttgaaaaaatctttcttgatatatagcattgctctt 19015402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25463714 - 25463674
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    ||||||| |||||||||||||||| ||||||||||||||||    
T  25463714 ttttcttcataaaatctttcttgatatatagcattgctctt 25463674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9910320 - 9910358
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  9910320 ttttcttgaaaaaatctttcttgatatatagcattgctc 9910358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32000294 - 32000332
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  32000294 ttttcttgagaaaatctttcttgatatatagcattgctc 32000332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 34519795 - 34519757
Alignment:
Q  2 tttcttgataaaatctttcttgacatatagcattgctct 40  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  34519795 tttcttaataaaatctttcttgatatatagcattgctct 34519757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 36966735 - 36966773
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  36966735 ttttcttgaaaaaatctttcttgatatatagcattgctc 36966773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 37821861 - 37821899
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  37821861 ttttcttgaaaaaatctttcttgatatatagcattgctc 37821899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 44094736 - 44094698
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  44094736 ttttcttgataaaatatttcttgatatatagcattgctc 44094698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 51621017 - 51620979
Alignment:
Q  2 tttcttgataaaatctttcttgacatatagcattgctct 40  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  51621017 tttcttaataaaatctttcttgatatatagcattgctct 51620979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3559655 - 3559614
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    |||| ||||||||||||||||||| ||||||||||| |||||    
T  3559655 tttttttgataaaatctttcttgatatatagcattgttcttt 3559614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40273740 - 40273699
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    ||||||||| |||||||||||||| || ||||||||||||||    
T  40273740 ttttcttgaaaaaatctttcttgatatctagcattgctcttt 40273699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25973452 - 25973412
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    ||||| |||||||||||||||||| ||||| ||||||||||    
T  25973452 ttttcatgataaaatctttcttgatatataacattgctctt 25973412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2754755 - 2754712
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctttta 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  2754755 ttttcttgataaaatctttcttgatatatagcattgctctttta 2754712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11347306 - 11347265
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  11347306 ttttcttgataaaatctttcttgatatatagcattgctcttt 11347265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3574554 - 3574594
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  3574554 ttttcttgataaaatctttcttgatatatagcattgctctt 3574594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 6041922 - 6041879
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctttta 44  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  6041922 ttttcttgataaaatctttcttgatatatagcattgctcattta 6041879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34482937 - 34482980
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctttta 44  Q
    ||||||||| |||||||||||||| |||||||||||||||||||    
T  34482937 ttttcttgaaaaaatctttcttgatatatagcattgctctttta 34482980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37217080 - 37217123
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctttta 44  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  37217080 ttttcttgataaaatctttcttgatatatagcattgctcattta 37217123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42297391 - 42297352
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctct 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  42297391 ttttcttgataaaatctttcttgatatatagcattgctct 42297352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3456102 - 3456064
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  3456102 ttttcttgataaaatctttcttgatatatagcattgctc 3456064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 48160943 - 48160905
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  48160943 ttttcttgataaaatctttcttgatatatagcattgctc 48160905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3137441 - 3137481
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  3137441 ttttcttgaaaaaatctttcttgatatatagcattgctctt 3137481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24343585 - 24343545
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  24343585 ttttcttgataaaatctttcttaatatatagcattgctctt 24343545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33113831 - 33113791
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    ||||||| |||||||||||||||| ||||||||||||||||    
T  33113831 ttttcttaataaaatctttcttgatatatagcattgctctt 33113791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8320611 - 8320649
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  8320611 ttttcttgataaaatctttcttgatatataacattgctc 8320649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 30385049 - 30385011
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  30385049 ttttcttgataaaatctttcttgataaatagcattgctc 30385011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 40327912 - 40327878
Alignment:
Q  2 tttcttgataaaatctttcttgacatatagcattg 36  Q
    ||||||||||||||||||||||| |||||||||||    
T  40327912 tttcttgataaaatctttcttgatatatagcattg 40327878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37522091 - 37522050
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  37522091 ttttcttgaaaaaatctttcttgatatatagtattgctcttt 37522050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 47402630 - 47402663
Alignment:
Q  8 gataaaatctttcttgacatatagcattgctctt 41  Q
    ||||||||||||||||| ||||||||||||||||    
T  47402630 gataaaatctttcttgatatatagcattgctctt 47402663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1645992 - 1646034
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctttt 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  1645992 ttttcttgataaaatctttcttgatatatagcattgctctttt 1646034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32064783 - 32064741
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctttt 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  32064783 ttttcttgataaaatctttcttgatatatagcattgctctttt 32064741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15187598 - 15187558
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  15187598 ttttcttgataaaatctttcttgatatatagcattgctctt 15187558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17841877 - 17841919
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctttt 43  Q
    ||||||||| |||||||||||||| ||||||||||||||||||    
T  17841877 ttttcttgaaaaaatctttcttgatatatagcattgctctttt 17841919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 24211580 - 24211618
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  24211580 ttttcttgataaaatctttcttgatatatagcattgctc 24211618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32393896 - 32393858
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  32393896 ttttcttgataaaatctttcttgatatatagcattgctc 32393858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34665420 - 34665382
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  34665420 ttttcttgataaaatctttcttgatatatagcattgctc 34665382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40780156 - 40780197
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  40780156 ttttcttgaaaaaatctttcttgatatatagcattgctcttt 40780197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42755069 - 42755114
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttttata 46  Q
    |||||||||||||||||||||||| ||||| |||||||||| ||||    
T  42755069 ttttcttgataaaatctttcttgatatatatcattgctcttatata 42755114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26042143 - 26042183
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  26042143 ttttcttgataaaatctttcttaatatatagcattgctctt 26042183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31347809 - 31347852
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctttta 44  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||    
T  31347809 ttttcttgagaaaatatttcttgatatatagcattgctctttta 31347852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 20091828 - 20091866
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  20091828 ttttcttgataaaatatttcttgatatatagcattgctc 20091866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35353079 - 35353041
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  35353079 ttttcttgaaaaaatctttcttgatatatagcattgctc 35353041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14128902 - 14128865
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgct 38  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  14128902 ttttattgataaaatctttcttgatatatagcattgct 14128865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 41819807 - 41819844
Alignment:
Q  3 ttcttgataaaatctttcttgacatatagcattgctct 40  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  41819807 ttcttgataaaatctttcttgatatataacattgctct 41819844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 27782145 - 27782181
Alignment:
Q  2 tttcttgataaaatctttcttgacatatagcattgct 38  Q
    |||||||||||||| |||||||| |||||||||||||    
T  27782145 tttcttgataaaatatttcttgatatatagcattgct 27782181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37986082 - 37986122
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    |||| ||||||||||||||||||| |||||||||| |||||    
T  37986082 tttttttgataaaatctttcttgatatatagcattactctt 37986122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39772828 - 39772872
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttttat 45  Q
    |||| |||||||||| |||||||| ||||| ||||||||||||||    
T  39772828 tttttttgataaaatatttcttgatatataacattgctcttttat 39772872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2477674 - 2477633
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  2477674 ttttcttgataaaatctttcttgatatatagcattgctcttt 2477633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6043538 - 6043578
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  6043538 ttttcttgataaaatctttcttgatatatagcattgctctt 6043578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 3362816 - 3362777
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctct 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  3362816 ttttcttgataaaatctttcttgatatatagcattgctct 3362777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38899753 - 38899792
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctct 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  38899753 ttttcttgataaaatctttcttgatatatagcattgctct 38899792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 11361158 - 11361196
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  11361158 ttttcttgataaaatctttcttgatatatagcattgctc 11361196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 12850839 - 12850801
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  12850839 ttttcttgataaaatctttcttgatatatagcattgctc 12850801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4892240 - 4892199
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  4892240 ttttcttgaaaaaatctttcttgatatatagcattgctcttt 4892199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14138706 - 14138666
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  14138706 ttttcttgataaaatctttcttgatatataacattgctctt 14138666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 22913081 - 22913119
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  22913081 ttttcttgaaaaaatctttcttgatatatagcattgctc 22913119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25398276 - 25398238
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  25398276 ttttcttgaaaaaatctttcttgatatatagcattgctc 25398238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33584356 - 33584394
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  33584356 ttttcttgaaaaaatctttcttgatatatagcattgctc 33584394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8145413 - 8145372
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    |||||||||||||||||||||||| ||||| |||| ||||||    
T  8145413 ttttcttgataaaatctttcttgatatataacattcctcttt 8145372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 12614761 - 12614798
Alignment:
Q  2 tttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  12614761 tttcttgataaaatatttcttgatatatagcattgctc 12614798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10442816 - 10442857
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  10442816 ttttcttgataaaatctttcttgatatatagcattgctcttt 10442857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4751484 - 4751440
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttttat 45  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||    
T  4751484 ttttcttgataaaatctttcttgatatatagcattgctctgttat 4751440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31078846 - 31078885
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctct 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  31078846 ttttcttgataaaatctttcttgatatatagcattgctct 31078885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33530715 - 33530754
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctct 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  33530715 ttttcttgataaaatctttcttgatatatagcattgctct 33530754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2624875 - 2624837
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  2624875 ttttcttgataaaatctttcttgatatatagcattgctc 2624837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21802349 - 21802391
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctttt 43  Q
    ||||||||||||||| |||||||| ||||||||||||||||||    
T  21802349 ttttcttgataaaatatttcttgatatatagcattgctctttt 21802391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22199299 - 22199261
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  22199299 ttttcttgataaaatctttcttgatatatagcattgctc 22199261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 36072985 - 36072947
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  36072985 ttttcttgataaaatctttcttgatatatagcattgctc 36072947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 49387915 - 49387953
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  49387915 ttttcttgataaaatctttcttgatatatagcattgctc 49387953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7745139 - 7745176
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgct 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7745139 ttttcttgataaaatctttcttgatatatagcattgct 7745176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24128277 - 24128236
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  24128277 ttttcttgaaaaaatctttcttgatatatagcattgctcttt 24128236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24392705 - 24392664
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  24392705 ttttcttgagaaaatctttcttgatatatagcattgctcttt 24392664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 47290104 - 47290063
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  47290104 ttttcttgaaaaaatctttcttgatatatagcattgctcttt 47290063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23964492 - 23964536
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttttat 45  Q
    |||| ||||||||||||||||||| ||||| ||||||||||||||    
T  23964492 tttttttgataaaatctttcttgatatataacattgctcttttat 23964536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44893464 - 44893423
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    |||| |||| |||||||||||||| |||||||||||||||||    
T  44893464 tttttttgaaaaaatctttcttgatatatagcattgctcttt 44893423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36073388 - 36073348
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    ||||||||| |||||||||||||| |||||||||| |||||    
T  36073388 ttttcttgaaaaaatctttcttgatatatagcattcctctt 36073348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 50156605 - 50156645
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    ||||||||| |||||||||||| | ||||||||||||||||    
T  50156605 ttttcttgaaaaaatctttcttaatatatagcattgctctt 50156645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 9293604 - 9293645
Alignment:
Q  2 tttcttgataaaatctttcttgacatatagcattgctctttt 43  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  9293604 tttcttgataaaatctttcttgatatatagcattgctctttt 9293645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35160795 - 35160756
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctct 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  35160795 ttttcttgataaaatctttcttgatatatagcattgctct 35160756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 21936119 - 21936081
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  21936119 ttttcttgataaaatctttcttgatatatagcattgctc 21936081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10661925 - 10661888
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgct 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  10661925 ttttcttgataaaatctttcttgatatatagcattgct 10661888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13354884 - 13354843
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  13354884 ttttcttgataaaatctttcttgatatataacattgctcttt 13354843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23268089 - 23268129
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  23268089 ttttcttgaaaaaatctttcttgatatatagcattgctctt 23268129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7475535 - 7475574
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctct 40  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  7475535 ttttcttgaaaaaatctttcttgatatatagcattgctct 7475574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43330950 - 43330903
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttttatata 48  Q
    |||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  43330950 tttttttgagaaaatctttcttgatatatagcattgctcttatatata 43330903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 14941394 - 14941432
Alignment:
Q  2 tttcttgataaaatctttcttgacatatagcattgctct 40  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  14941394 tttcttaataaaatctttcttgatatatagcattgctct 14941432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33380245 - 33380207
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  33380245 ttttcttgaaaaaatctttcttgatatatagcattgctc 33380207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15329311 - 15329271
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  15329311 ttttcttgataaaatctttcttgatatatagcattgctctt 15329271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45637750 - 45637710
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  45637750 ttttcttgataaaatctttcttgatatatagcattgctctt 45637710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 15577877 - 15577916
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctct 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  15577877 ttttcttgataaaatctttcttgatatatagcattgctct 15577916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3962017 - 3961979
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  3962017 ttttcttgataaaatctttcttgatatatagcattgctc 3961979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4974762 - 4974800
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  4974762 ttttcttgataaaatctttcttgatatatagcattgctc 4974800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 24395010 - 24394972
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  24395010 ttttcttgataaaatctttcttgatatatagcattgctc 24394972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 42611849 - 42611811
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  42611849 ttttcttgataaaatctttcttgatatatagcattgctc 42611811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 48880954 - 48880992
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  48880954 ttttcttgataaaatctttcttgatatatagcattgctc 48880992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37477107 - 37477147
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  37477107 ttttcttgagaaaatctttcttgatatatagcattgctctt 37477147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 20010124 - 20010162
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  20010124 tttttttgataaaatctttcttgatatatagcattgctc 20010162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34482873 - 34482835
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  34482873 ttttcttaataaaatctttcttgatatatagcattgctc 34482835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6127313 - 6127273
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  6127313 ttttcttgataaaatctttcttgatatatagcattgctctt 6127273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23291111 - 23291151
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  23291111 ttttcttgataaaatctttcttgatatatagcattgctctt 23291151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28675186 - 28675146
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  28675186 ttttcttgataaaatctttcttgatatatagcattgctctt 28675146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33695354 - 33695393
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctct 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  33695354 ttttcttgataaaatctttcttgatatatagcattgctct 33695393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33696734 - 33696695
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctct 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  33696734 ttttcttgataaaatctttcttgatatatagcattgctct 33696695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 17705492 - 17705530
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  17705492 ttttcttgataaaatctttcttgatatatagcattgctc 17705530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18365600 - 18365641
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  18365600 tttttttgataaaatctttcttgatatatagcattgctcttt 18365641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18370864 - 18370905
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  18370864 tttttttgataaaatctttcttgatatatagcattgctcttt 18370905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 17176048 - 17176086
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  17176048 ttttattgataaaatctttcttgatatatagcattgctc 17176086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25986968 - 25986930
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  25986968 ttttcttaataaaatctttcttgatatatagcattgctc 25986930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 8515755 - 8515787
Alignment:
Q  4 tcttgataaaatctttcttgacatatagcattg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  8515755 tcttgataaaatctttcttgatatatagcattg 8515787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 11659 - 11621
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  11659 ttttcttgataaaatctttcttgatatatagcattgctc 11621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41049 - 41007
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctctttt 43  Q
    |||| ||||||||||||||||||| ||||||||||||||||||    
T  41049 tttttttgataaaatctttcttgatatatagcattgctctttt 41007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12880 - 12839
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  12880 ttttcttgaaaaaatctttcttgatatatagcattgctcttt 12839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4434 - 4393
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctcttt 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  4434 ttttcttgaaaaaatctttcttgatatatagcattgctcttt 4393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 47888 - 47850
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgctc 39  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  47888 ttttcttgataaaatctttcttgataaatagcattgctc 47850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3106 - 3069
Alignment:
Q  1 ttttcttgataaaatctttcttgacatatagcattgct 38  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  3106 ttttattgataaaatctttcttgatatatagcattgct 3069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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