View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_96 (Length: 221)
Name: NF19382_high_96
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_96 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 11247025 - 11247196
Alignment:
| Q |
8 |
atcaattcggtacactattacacgcttcaatatggacaagnnnnnnnnnnntcaaggataa-ttttcaattgtatatgttaaatttcacctttttgacat |
106 |
Q |
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| T |
11247025 |
atcaatttggcacactattacacgcttcaatatggacaagaagaaaaaaattcaaggataaattttcaattttatatgttaaatttcacctttttgacat |
11247124 |
T |
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| Q |
107 |
ctatataagcatctgtgttgtgaggatttcaaactcaaatcaacaaaactagttacaaattttatacacact |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11247125 |
ctatataagcatctgtgttgtgaggatttcaaactcaaatcaacaaaactagttacaaattttatacacact |
11247196 |
T |
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