View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_high_99 (Length: 212)
Name: NF19382_high_99
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_high_99 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 7651968 - 7651781
Alignment:
| Q |
1 |
gattttgatttggtggtggcatcatcatgttcatgtccttgaattgaggccccttaagatcttcaagtcctttcatctgctgaagttgttgcaactgttg |
100 |
Q |
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| T |
7651968 |
gattttgatttggtggtggcatcatcatgttcatgtccttgaattgagtccccttaagatcttcaagtcctttcatctgctgaagttgttgaa------- |
7651876 |
T |
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| Q |
101 |
ttgtagctgttgttgaggattctgctcttgttgtccacctccctttggttggttttggttatttataggatccttttgcccattgttgttattgttttct |
200 |
Q |
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| T |
7651875 |
-----gctgttgttgaggattctgctcttgttgtccacctccctttggttggttttggttatttataggatccttttgcccattgttgttattgttttct |
7651781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 7657368 - 7657161
Alignment:
| Q |
2 |
attttgatttggtggtggcatcatcatgttcatgtccttgaattgaggccccttaagatcttcaagtcctttcatctgctgaagttgttgcaactgttgt |
101 |
Q |
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| T |
7657368 |
attttgatttggtggtggcattttcatgttcatgtccttgaattgaggcaccttcagatctccaaatcctttaatatgttgaagttgttgcagctgttgt |
7657269 |
T |
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| Q |
102 |
---tgt---------agctgttgttgaggattctgctcttgttgtccacctccctttggttggttttggttatttataggatccttttgcccattgttgt |
189 |
Q |
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| T |
7657268 |
aactgttgctgaagctgctgttgttgaggattttgtccttgttggctaccaccctttggctgattttggttatttccaggacccttttgccccttgttgt |
7657169 |
T |
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| Q |
190 |
tattgttt |
197 |
Q |
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| T |
7657168 |
tattgttt |
7657161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 48539049 - 48539089
Alignment:
| Q |
69 |
cctttcatctgctgaagttgttgcaactgttgttgtagctg |
109 |
Q |
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| T |
48539049 |
cctttcatctgttgaagttgttgtaactgttgttgaagctg |
48539089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 48573304 - 48573344
Alignment:
| Q |
69 |
cctttcatctgctgaagttgttgcaactgttgttgtagctg |
109 |
Q |
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| T |
48573304 |
cctttcatctgttgaagttgttgtaactgttgttgaagctg |
48573344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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