View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_low_102 (Length: 213)

Name: NF19382_low_102
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_low_102
NF19382_low_102
[»] chr7 (2 HSPs)
chr7 (16-120)||(18780646-18780749)
chr7 (107-194)||(18780539-18780629)
[»] chr3 (7 HSPs)
chr3 (17-120)||(1605829-1605932)
chr3 (107-194)||(1605724-1605813)
chr3 (17-120)||(1622951-1623054)
chr3 (107-194)||(1622844-1622934)
chr3 (16-59)||(1629186-1629229)
chr3 (139-176)||(24595188-24595225)
chr3 (139-176)||(51308770-51308807)
[»] chr8 (1 HSPs)
chr8 (139-176)||(4678054-4678091)
[»] chr4 (1 HSPs)
chr4 (139-176)||(55849574-55849611)
[»] chr1 (1 HSPs)
chr1 (139-176)||(20225645-20225682)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 18780749 - 18780646
Alignment:
Q  16 attattctacttaattctttgtaattaaattcattgtaattcttgtaagagcatacccatattcttttgtacattgcgacagatattctttttcatattc 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  18780749 attattgtacttaattctttgtaattaaattcattgtaattcttgtaagagcatacccatattcttttgtacattgcgagagatattc-ttttcatattc 18780651  T
Q  116 atata 120  Q
    |||||    
T  18780650 atata 18780646  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 18780629 - 18780539
Alignment:
Q  107 ttcatattcatataaacattatcgttgtacaat---accttgagtttgagggaagctattaagaaaaatgatagttagtagtgtaagtaat 194  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18780629 ttcatattcatataaacattatcgttgtacaatcataccttgagtttgagggaagctattaagaaaaatgatagttagtagtgtaagtaat 18780539  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 1605932 - 1605829
Alignment:
Q  17 ttattctacttaattctttgtaattaaattcattgtaattcttgtaagagcatacccatattcttttgtacattgcgacagatattctttttcatattca 116  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||||||||||||||||||    
T  1605932 ttattgtacttaattctttgtaattaagttcattgtaattcttgtaagagcatgctcatattcttttgtacactgcgagagatattctttttcatattca 1605833  T
Q  117 tata 120  Q
    ||||    
T  1605832 tata 1605829  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 1605813 - 1605724
Alignment:
Q  107 ttcatattcatataaacattatcgttgtaca--ataccttgagtttgagggaagctattaagaaaaatgatagttagtagtgtaagtaat 194  Q
    ||||||||||||||||||||||||||||| |  ||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  1605813 ttcatattcatataaacattatcgttgtaaatcatatcttgagtttaagggaagctattaagaataatgatagttagtagtgtaagtaat 1605724  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 1623054 - 1622951
Alignment:
Q  17 ttattctacttaattctttgtaattaaattcattgtaattcttgtaagagcatacccatattcttttgtacattgcgacagatattctttttcatattca 116  Q
    ||||| ||||||||||||||||||||| |||||||||||| |||||||||||| | |||||||||||||||| |  || ||||||| ||||||||| |||    
T  1623054 ttattgtacttaattctttgtaattaagttcattgtaattattgtaagagcatgctcatattcttttgtacactttgagagatattatttttcatagtca 1622955  T
Q  117 tata 120  Q
    ||||    
T  1622954 tata 1622951  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 1622934 - 1622844
Alignment:
Q  107 ttcatattcatataaacattatcgttgtacaat---accttgagtttgagggaagctattaagaaaaatgatagttagtagtgtaagtaat 194  Q
    |||||||||||||||||||||||||||||||||   || ||||||||||| | |||||||||||| ||||||||||||  |||||||||||    
T  1622934 ttcatattcatataaacattatcgttgtacaatcatacattgagtttgagaggagctattaagaataatgatagttagcggtgtaagtaat 1622844  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 1629229 - 1629186
Alignment:
Q  16 attattctacttaattctttgtaattaaattcattgtaattctt 59  Q
    |||||||||| || || |||||||||||||||||||||||||||    
T  1629229 attattctacatagttatttgtaattaaattcattgtaattctt 1629186  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 24595188 - 24595225
Alignment:
Q  139 taccttgagtttgagggaagctattaagaaaaatgata 176  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  24595188 taccttgagtttgagggaggctattaagaataatgata 24595225  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 51308770 - 51308807
Alignment:
Q  139 taccttgagtttgagggaagctattaagaaaaatgata 176  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  51308770 taccttgagtttgagggaggctattaagaataatgata 51308807  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 4678054 - 4678091
Alignment:
Q  139 taccttgagtttgagggaagctattaagaaaaatgata 176  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  4678054 taccttgagtttgagggaggctattaagaataatgata 4678091  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 55849611 - 55849574
Alignment:
Q  139 taccttgagtttgagggaagctattaagaaaaatgata 176  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  55849611 taccttgagtttgagggaggctattaagaataatgata 55849574  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 20225682 - 20225645
Alignment:
Q  139 taccttgagtttgagggaagctattaagaaaaatgata 176  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  20225682 taccttgagtttgagggaggctattaagaataatgata 20225645  T

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