View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_104 (Length: 211)
Name: NF19382_low_104
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_104 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 38946708 - 38946530
Alignment:
| Q |
18 |
atgaaatggagtggtatagagtcatgctttattctttggatttgtttaaaatgaatggaatatcatggaatacgatggaatctattccatatcataccac |
117 |
Q |
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| T |
38946708 |
atgaaatggaatggtatagagtcatgcttcattgcttggatttgtttaaaatgaatggaatatcatggaataagatggaatctattccatatcataccac |
38946609 |
T |
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| Q |
118 |
aatttccttctattttttatcccctaatttggggcggatgtaatggaaagtaacattttaattgaataattactctttt |
196 |
Q |
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| T |
38946608 |
aatttccttctattttttatcccccaatttggggcggatgtaatggaaagtaacattttaattgaataattactctttt |
38946530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 15004197 - 15004372
Alignment:
| Q |
18 |
atgaaatggagtggtatagagtcatgctttattctttggatttgtttaaaatgaatggaatatcatggaatacgatggaatctattccatatcataccac |
117 |
Q |
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| T |
15004197 |
atgaaatggtatgatatagagtcatgctctattgttttgatttgttaaaaatgaatgaaatggtatggaacacaatggaatccattccatcccataccac |
15004296 |
T |
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| Q |
118 |
aatttccttctattttt-tatcccct-aatttggggcggatgtaatggaaagtaacattttaattgaataattact |
191 |
Q |
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| T |
15004297 |
cgtttccttttatttttccttcccctcaatttagggtgtatttaatggaatgaaacattttaattaaataattact |
15004372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 191
Target Start/End: Original strand, 15021724 - 15021885
Alignment:
| Q |
32 |
tatagagtcatgctttattctttggatttgtttaaaatgaatggaatatcatggaatacgatggaatctattccatatcataccacaatttccttctatt |
131 |
Q |
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| T |
15021724 |
tatagagtcatgctctattgttttgatttgttaaaaatgaatgaaatggtatggaacacaatggaattcattccatcccataccaccgtttccttttatt |
15021823 |
T |
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| Q |
132 |
ttttat--cccctaatttggggcggatgtaatggaaagtaacattttaattgaataattact |
191 |
Q |
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||| || | | |||||||||| | || |||||||| | |||||||||||| |||||||||| |
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| T |
15021824 |
tttcattcctcttaatttggggtgtatttaatggaatgaaacattttaattaaataattact |
15021885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 16634244 - 16634131
Alignment:
| Q |
85 |
gaatacgatggaatctattccatatcataccacaatttccttctattttttatcccc--taatttggggcggatgtaatggaaagtaacattttaattga |
182 |
Q |
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|||||| || ||| ||||||||| ||||| | ||||||||| |||||| || ||| ||||||||| | ||||||||||| | || ||||||||||| |
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| T |
16634244 |
gaatacaatagaaactattccatcgcatacaatcatttccttccatttttcattccccttaatttgggatgtatgtaatggaatggaagattttaattga |
16634145 |
T |
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| Q |
183 |
ataattactctttt |
196 |
Q |
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|||||||||||||| |
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| T |
16634144 |
ataattactctttt |
16634131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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