View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_low_106 (Length: 206)

Name: NF19382_low_106
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_low_106
NF19382_low_106
[»] chr1 (3 HSPs)
chr1 (94-192)||(5715633-5715731)
chr1 (1-36)||(5715761-5715796)
chr1 (94-186)||(17744378-17744470)
[»] chr7 (5 HSPs)
chr7 (96-189)||(44832207-44832300)
chr7 (96-146)||(32199604-32199654)
chr7 (96-168)||(32073124-32073196)
chr7 (129-190)||(20609197-20609258)
chr7 (129-190)||(20611686-20611747)
[»] chr2 (2 HSPs)
chr2 (94-192)||(17373650-17373748)
chr2 (94-192)||(37621877-37621975)
[»] chr8 (1 HSPs)
chr8 (96-148)||(32540315-32540367)
[»] chr4 (7 HSPs)
chr4 (108-192)||(26547098-26547182)
chr4 (96-149)||(5290697-5290750)
chr4 (107-172)||(20628736-20628801)
chr4 (107-189)||(31853492-31853574)
chr4 (96-149)||(20635561-20635614)
chr4 (98-167)||(47385600-47385668)
chr4 (107-167)||(29134459-29134519)
[»] chr5 (3 HSPs)
chr5 (96-149)||(20362939-20362992)
chr5 (96-170)||(8788086-8788162)
chr5 (107-147)||(23033144-23033184)
[»] chr3 (4 HSPs)
chr3 (107-147)||(29565013-29565053)
chr3 (96-133)||(36619618-36619655)
chr3 (96-144)||(10352516-10352564)
chr3 (96-168)||(35937502-35937574)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 5715731 - 5715633
Alignment:
Q  94 agatattttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcatgat 192  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||    
T  5715731 agatattttaaccttgtaatttgatattattcttatttttgaccttataatatacatatggtctaaaaaagtgatctaatgatttaattttttcatgat 5715633  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 5715796 - 5715761
Alignment:
Q  1 ggtcatttaaaatacgtagaatttaggattaattgt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  5715796 ggtcatgtaaaatacgtagaatttaggattaattgt 5715761  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 17744378 - 17744470
Alignment:
Q  94 agatattttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaatttttt 186  Q
    |||||||||||  ||||||||||| ||||||||||||||| | |  ||||||||| |  | |||| ||||||||| | |||| | ||||||||    
T  17744378 agatattttaatcttgtaatttgagattattcttatttttgaaccaataatatacgcgggatctacaaaagtgatctaatgaatgaatttttt 17744470  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 44832207 - 44832300
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcat 189  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| ||||||||   ||||| ||||||||||| |   |||| |||||||||||    
T  44832207 atattttaactttgtaatttgagattcttcttattttttaccttttaatatacgtgtggtccaaaaaagtgatctagagattgaattttttcat 44832300  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 32199654 - 32199604
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatat 146  Q
    |||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  32199654 atattttaaccttgtaatttgatattattcttattttttaccctctaatat 32199604  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 32073124 - 32073196
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgat 168  Q
    ||||| ||||| | ||| |||| ||| ||||||||||| ||||| |||||||||| ||||| |||||||||||    
T  32073124 atattctaactctctaaattgagattcttcttatttttgaccttgtaatatacacgtggtccaaaaaagtgat 32073196  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 20609197 - 20609258
Alignment:
Q  129 ttttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcatg 190  Q
    |||||||||||||||||||| | ||||| ||||||||||| |   |||| ||||||||||||    
T  20609197 ttttttaccttataatatacgcgtggtccaaaaaagtgatctagagattgaattttttcatg 20609258  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 20611686 - 20611747
Alignment:
Q  129 ttttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcatg 190  Q
    |||||||||||||||||||| | ||||| ||||||||||| |   |||| ||||||||||||    
T  20611686 ttttttaccttataatatacgcgtggtccaaaaaagtgatctagagattgaattttttcatg 20611747  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 17373748 - 17373650
Alignment:
Q  94 agatattttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcatgat 192  Q
    ||||||| ||||| |||||||||| ||| ||| ||||||| |||||||||||||| |  |||| ||||||||||| |   |||| ||||||||||||||    
T  17373748 agatattctaactctgtaatttgagattcttcgtatttttgaccttataatatacgcgaggtccaaaaaagtgatctagagattgaattttttcatgat 17373650  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 37621975 - 37621877
Alignment:
Q  94 agatattttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcatgat 192  Q
    ||||||||||||  |||||||||| ||| |||||| |||| ||| ||||||||||   ||||| ||||||||||| |  | ||| ||||||||||||||    
T  37621975 agatattttaaccatgtaatttgagattcttcttacttttgaccctataatatacgtgtggtccaaaaaagtgatctagttattgaattttttcatgat 37621877  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 32540367 - 32540315
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatatac 148  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||||| ||||    
T  32540367 atattttagccttgtaatttgatattattcttatttttgaccttataacatac 32540315  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 26547182 - 26547098
Alignment:
Q  108 tgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcatgat 192  Q
    |||||||||||||| || |||||||||||  |||||||||| | ||||| ||||||||||| |   |||| ||||||||||||||    
T  26547182 tgtaatttgatattctttttattttttacactataatatacgcgtggtccaaaaaagtgatgtagagattgaattttttcatgat 26547098  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 5290697 - 5290750
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatataca 149  Q
    |||||||||  ||||||||||| ||| ||||||||||||||| |||||||||||    
T  5290697 atattttaaacttgtaatttgagattcttcttattttttaccatataatataca 5290750  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 20628736 - 20628801
Alignment:
Q  107 ttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatga 172  Q
    ||||||||||||||| || |||||||||||| | |||||||||| | ||| |||| ||||||||||    
T  20628736 ttgtaatttgatattcttattattttttaccctgtaatatacacttagtccaaaagagtgatatga 20628801  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 31853492 - 31853574
Alignment:
Q  107 ttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgatatgatgatttaattttttcat 189  Q
    ||||||||| | ||| |||||||||||  || |||||||||| | ||||| ||||||||||| | | |||| |||||||||||    
T  31853492 ttgtaatttaaaattcttcttatttttggccctataatatactcttggtccaaaaaagtgatctaaagattgaattttttcat 31853574  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 20635561 - 20635614
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatataca 149  Q
    |||||||||| ||||||||||||||| |  |||||||||||| |||||| ||||    
T  20635561 atattttaaccttgtaatttgatattctcattattttttaccctataatgtaca 20635614  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 47385600 - 47385668
Alignment:
Q  98 attttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtga 167  Q
    ||||||| ||||| |||||||||| |||||| |||||| |||||||||||| | | || |||||||||||    
T  47385600 attttaattttgtgatttgatattcttctta-tttttatcttataatatactcgtagtttaaaaaagtga 47385668  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 29134519 - 29134459
Alignment:
Q  107 ttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtga 167  Q
    ||||||||| ||||| ||||||||||| ||| |||||||| ||  | ||||||||||||||    
T  29134519 ttgtaatttaatatttttcttatttttgaccatataatattcatgtagtctaaaaaagtga 29134459  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 20362939 - 20362992
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatataca 149  Q
    |||||||||| ||||||||||| ||| ||||||||||| ||| |||||||||||    
T  20362939 atattttaaccttgtaatttgagattcttcttatttttgaccatataatataca 20362992  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 8788086 - 8788162
Alignment:
Q  96 atattttaactttgtaatttgatattatt--cttattttttaccttataatatacacatggtctaaaaaagtgatat 170  Q
    ||||| |||||||||||||||| ||| ||  ||||||||| ||| ||||||||||   ||||| |||||||||||||    
T  8788086 atattctaactttgtaatttgagatttttttcttatttttgaccctataatatacgtgtggtccaaaaaagtgatat 8788162  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 23033144 - 23033184
Alignment:
Q  107 ttgtaatttgatattattcttattttttaccttataatata 147  Q
    ||||||||||||||| ||||||||||||||  |||||||||    
T  23033144 ttgtaatttgatattcttcttattttttacgctataatata 23033184  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 29565053 - 29565013
Alignment:
Q  107 ttgtaatttgatattattcttattttttaccttataatata 147  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  29565053 ttgtaatttgatattcttcttattttttaccctataatata 29565013  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 36619618 - 36619655
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttt 133  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  36619618 atattttaactatgtaatttgatattcttcttattttt 36619655  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 10352516 - 10352564
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataat 144  Q
    ||||||||||| | |||||||| ||| ||||||||||||||| ||||||    
T  10352516 atattttaactatataatttgagattcttcttattttttaccatataat 10352564  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 35937502 - 35937574
Alignment:
Q  96 atattttaactttgtaatttgatattattcttattttttaccttataatatacacatggtctaaaaaagtgat 168  Q
    |||||||||  ||||||||||||||| ||||||||||| ||  ||||||||||   ||||  |||||||||||    
T  35937502 atattttaatcttgtaatttgatattcttcttatttttaactctataatatacgtgtggttcaaaaaagtgat 35937574  T

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