View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_11 (Length: 558)
Name: NF19382_low_11
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 113 - 558
Target Start/End: Original strand, 53032977 - 53033422
Alignment:
| Q |
113 |
tatatgtatagattttgtgttcatgattcttcctcctttcttatgtagagtcattccaaagacacttatgctaagagaggtacgtactttaatcactacc |
212 |
Q |
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| T |
53032977 |
tatatgtatacattttgtgctcatgattcttcctactttcttatgtagagtcattccaaagacacttatgctaagagaggtacgtactttaatcactacc |
53033076 |
T |
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| Q |
213 |
actagtatatatatttggattttacaatactactacaacgattaaatgtgtatttttagttgaattaattaattaagtatgattagttggttaatttaga |
312 |
Q |
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| T |
53033077 |
actagtatatatatttggattatacaatactactacaacgattaaatgtgtatttttagttgaattaattaattaagtatgattagttggttaatttaga |
53033176 |
T |
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| Q |
313 |
taactggaaaaacagtgggagaagtaagagctgtatcggacatgcaccaacgcaaagccgaaatggctcgacaagctgatgcatttattgccttaccagg |
412 |
Q |
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| T |
53033177 |
taactggagaaacagtgggagaagtaagagctgtatcggacatgcaccaacgcaaagccgaaatggctcgacaagctgatgcatttattgccttaccagg |
53033276 |
T |
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| Q |
413 |
tttgtccaacttttatatatgcacacatcattatcacctcattcaattcaatttattctcctttacctctataataataattgtaattaattaagaagtt |
512 |
Q |
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| T |
53033277 |
tttgtccaacttttatatatgcacacatcattatcacctcattcaattcaatttattctcctttacctctataataataattgtaattaattaagaagtt |
53033376 |
T |
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| Q |
513 |
aaggtgtttaactatcatcgttgtttccttcaaaagaaaagtatat |
558 |
Q |
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| T |
53033377 |
aaggtgtttaactatcatcgttgtttccttcaaaagaaaaatatat |
53033422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 53032848 - 53032960
Alignment:
| Q |
10 |
agcataggattgatgggtcgtatctcacaagttgtctatgatggtggacgccacgtcttagggtaccctcctttctttttcttcaattccttattcttct |
109 |
Q |
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| T |
53032848 |
agcataggattgatgggtcgtatctcacaagttgtctatgatggtggacgccacgtcttagggtaccctcctttctttttcttcaattccttattcttct |
53032947 |
T |
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| Q |
110 |
atctatatgtata |
122 |
Q |
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| T |
53032948 |
atctatatatata |
53032960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 7884778 - 7884850
Alignment:
| Q |
342 |
gctgtatcggacatgcaccaacgcaaagccgaaatggctcgacaagctgatgcatttattgccttaccaggtt |
414 |
Q |
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| T |
7884778 |
gctgtatcggacatgcaccaacgcaaggccgaaatggctcgacaggccgatgcttttattgccttgccaggtt |
7884850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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