View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19382_low_12 (Length: 551)
Name: NF19382_low_12
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_12 |
 | |
|
| [»] scaffold0929 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 26 - 544
Target Start/End: Original strand, 6543427 - 6543944
Alignment:
| Q |
26 |
atgttattatctatgtagtaaataaatacattcatcaatctctttcatcatttcccctaccctttgtgtaaatacaaacaaaaattacaatagagtaagc |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6543427 |
atgttattatctatgtagtaaataaatacattcatcaatctctctcatcatttcccctaccctttgtgtaaatacaaa-aaaaattacaatagagtaagc |
6543525 |
T |
|
| Q |
126 |
aaaccctcaaaaagtaaataataaacaatctcttccatatagttaacatatgtaaatcttattttcataaaacactctctagctttgaaccataagatgt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6543526 |
aaaccctcaaaaagtaaataataaacaatctctttaatatagttaacatatgtaaatcttattttcataaaacactctccagctttgaaccataagatgt |
6543625 |
T |
|
| Q |
226 |
gtgactttgtacattcaacatatatagcaataactcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcattgtaaaatgtcacattt |
325 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6543626 |
gtgactttgtactttcaacatatatagcaataactcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcattgtaaaatgtcacattt |
6543725 |
T |
|
| Q |
326 |
tttaccatagcatgtccatagttatttgggtgtccatcaggtctcaacaacataatttcagttgtattaagcatcaaaaatttcaaacctttctttgatg |
425 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6543726 |
tttaccattgcatgtccatagttattagggtgtccatcaggtctcaacaacataatttcagttgtatttagcatcaaaaatttcaaacctttctttgatg |
6543825 |
T |
|
| Q |
426 |
cttcctcttgtgctactttaaattcattcacttgtgttaaatatgtctctagaatgaaaccatttaagttcatttcttccttgctaaatggttttgtcct |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
6543826 |
cttcctcttgtgctactttaaattcattcacttgtgttaaatatgtctctagaatgtaaccatttaggttcatttcttccttgctaaatggttttttcct |
6543925 |
T |
|
| Q |
526 |
aacacaattccctcctttg |
544 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
6543926 |
cacacaattccctcctttg |
6543944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 326
Target Start/End: Original strand, 6554154 - 6554241
Alignment:
| Q |
239 |
ttcaacatatatagcaataactcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcattgtaaaatgtcacatttt |
326 |
Q |
| |
|
|||||||| | |||||| || ||| |||||||||| | ||| || || ||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
6554154 |
ttcaacatttctagcaagaaatcactccatgtatctataggccctggcaaacaccaatgaacacaatcattatacaatgtcacatttt |
6554241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 15265210 - 15265265
Alignment:
| Q |
254 |
aataactcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcatt |
309 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
15265210 |
aatatctcattccatgtatcaattggtccaggcaaacaccaatgaacacaatcatt |
15265265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 15256690 - 15256740
Alignment:
| Q |
259 |
ctcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcatt |
309 |
Q |
| |
|
|||||||||||| || | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
15256690 |
ctcattccatgtgtctataggtccaggcaaacaccaatgaacacaatcatt |
15256740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 15263065 - 15263015
Alignment:
| Q |
259 |
ctcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcatt |
309 |
Q |
| |
|
||||||||| ||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
15263065 |
ctcattccaagtatctataggtccaggcaaacaccaatgaacacaatcatt |
15263015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 2240 - 2325
Alignment:
| Q |
239 |
ttcaacatatatagcaataactcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcattgtaaaatgtcacatt |
324 |
Q |
| |
|
|||||||||| || ||| || ||| ||||||| |||| ||||||||| || |||||||| ||||||||||| || ||||||||||| |
|
|
| T |
2240 |
ttcaacatatctaacaagaaatcactccatgtgtcaataggtccaggcaagcaccaatgcacacaatcattatacaatgtcacatt |
2325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 6364181 - 6364266
Alignment:
| Q |
239 |
ttcaacatatatagcaataactcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcattgtaaaatgtcacatt |
324 |
Q |
| |
|
|||||||||| || ||| || ||| ||||||| |||| ||||||||| || |||||||| ||||||||||| || ||||||||||| |
|
|
| T |
6364181 |
ttcaacatatctaacaagaaatcactccatgtgtcaataggtccaggcaagcaccaatgcacacaatcattatacaatgtcacatt |
6364266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University