View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_14 (Length: 527)
Name: NF19382_low_14
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 5 - 511
Target Start/End: Complemental strand, 44092680 - 44092180
Alignment:
| Q |
5 |
gatggacatcatcaatccaccccatgattcttttttgt-agcacccgccaactaaagacacatattttcaacggaaccaaagtattccaaagttgattag |
103 |
Q |
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| T |
44092680 |
gatgaacatcattaatccaccccatgattcttttttgttagcacccgccaactaaagacacatattttcaacggaaccaaagtattccaaagttgattag |
44092581 |
T |
|
| Q |
104 |
ctcttaagtactgccaaaagatctttgtcaacgcctgccacaaaacattggttgattgattgnnnnnnnnnnnnnnnnnnntgacttaggtatgtgggac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44092580 |
ctcttaagtactgccaaaagatctttgtcaacgcctgccacaaaacattggttgattgattgtactactact---------tgacttaggtatgtgggac |
44092490 |
T |
|
| Q |
204 |
ctctgcacggccatataagtatgcatttttctctagcaatttgcttaaataattttggtcgttggtcgacatatgtgacccagtgagtgcaagttgccac |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
44092489 |
ctctgcacggccatataagtatgcatttttctctagcaatttgcttaaataattttggtcgctggtcgacatatgtgaccg-gtgagtgcaagttgccac |
44092391 |
T |
|
| Q |
304 |
tacgttcccgccagtatagcgtcatcttgtatgcattccaaaattcattttggactggatccatactatactagggatcgcaaattaattaattaattat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44092390 |
tacgttcccgccagtatagcgtcatcttgtatgcattccaaaattcattttggactggatccatactatactagggatcgcaaattaattaattaattat |
44092291 |
T |
|
| Q |
404 |
tcacaatagataagttatagacttatagtagtagt---agtaattgtttgtttgtttgtaataagctgctgagtttcattcttgccaattcaacaagtac |
500 |
Q |
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| T |
44092290 |
tcacaatagataagttatagacttatagtagtagtagtagtaattgtttgtttgtttgtaataagctgctgattttcattcttgccaattcaacaagtac |
44092191 |
T |
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| Q |
501 |
taacaactaac |
511 |
Q |
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| T |
44092190 |
taacaactaac |
44092180 |
T |
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