View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_20 (Length: 500)
Name: NF19382_low_20
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Complemental strand, 20777460 - 20776979
Alignment:
| Q |
19 |
ctttgtggtctagttgatgttctaaacttttctgtcgcttttgtaacttgtaagtaactttttcaaaaaa-cacaacataaacatccaaaatgtatcttt |
117 |
Q |
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| T |
20777460 |
ctttgtggtctacttgatgttctaaacttttctttcgctcttgtaacttgtaagtaactttttcaaaaaaacacaacataaacatccaaaatgtatcttt |
20777361 |
T |
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| Q |
118 |
taaagtaattaataactaaaggaacaattgagatgtgttaggatgatatccaacttgagattggtaaattcatttttgtagggtcttttgttaaatatat |
217 |
Q |
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| T |
20777360 |
tggagtaatttataactaaaggaacaattgagatgttttaggatgatatccaacttgagattgctaaattcatttttgtagggtcttttgttaaatatat |
20777261 |
T |
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| Q |
218 |
atttttaataacaattttcttataatatttgaacaaagcatacattaagtagtgcatgaaatagacttgtatatatcaacatttttattgtttttggact |
317 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
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| T |
20777260 |
attcttaataacaattttcttataatatttgaacaaagcatacattaagtagtgcatggaatagacttgtatatatcaacatatatattgtttttggact |
20777161 |
T |
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| Q |
318 |
taggcaatttgatgagacatattctatgcatcaaagtgaatggaaataaatatgaattaaataatgaagatggataattattaaaatacaaaccatc--- |
414 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20777160 |
taggcaattagatgagacatattctatgcatcaaagtgaatggaaataaatatgaattaaataatgaagatggataattcttaaaatacaaaccatcaaa |
20777061 |
T |
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| Q |
415 |
--nnnnnnnnnnnnnnnntagatagataatataaagaattgaattgcaattttaatgacatccaacttcttattcttctcac |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20777060 |
agaaaaagaagaaaaaaatagatagataatataaagaattgaattgcaattttaatgacatccaacttcttattcttttcac |
20776979 |
T |
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