View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_low_21 (Length: 488)

Name: NF19382_low_21
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_low_21
NF19382_low_21
[»] chr6 (9 HSPs)
chr6 (1-437)||(34716164-34716581)
chr6 (112-436)||(10607067-10607392)
chr6 (331-436)||(20688999-20689104)
chr6 (331-436)||(19063493-19063598)
chr6 (331-402)||(19070157-19070228)
chr6 (381-436)||(29382833-29382888)
chr6 (395-437)||(16249686-16249728)
chr6 (339-375)||(10360398-10360434)
chr6 (396-436)||(20687464-20687504)
[»] chr8 (8 HSPs)
chr8 (112-436)||(42638881-42639208)
chr8 (339-375)||(26777772-26777808)
chr8 (395-436)||(33801499-33801540)
chr8 (395-436)||(33802380-33802421)
chr8 (393-436)||(34364738-34364781)
chr8 (395-436)||(38686303-38686344)
chr8 (395-436)||(39655916-39655957)
chr8 (388-436)||(42638148-42638196)
[»] chr7 (10 HSPs)
chr7 (334-436)||(46813091-46813193)
chr7 (1-106)||(36846364-36846469)
chr7 (331-436)||(37730719-37730824)
chr7 (331-436)||(42343296-42343401)
chr7 (339-375)||(31276988-31277024)
chr7 (395-437)||(3821391-3821433)
chr7 (395-436)||(34852557-34852598)
chr7 (395-436)||(39987534-39987575)
chr7 (396-436)||(34853342-34853382)
chr7 (396-436)||(42344222-42344262)
[»] chr1 (6 HSPs)
chr1 (336-436)||(51778685-51778784)
chr1 (334-436)||(50353839-50353941)
chr1 (381-436)||(50354989-50355044)
chr1 (395-436)||(38618230-38618271)
chr1 (338-375)||(42309109-42309146)
chr1 (395-436)||(51610228-51610269)
[»] chr3 (5 HSPs)
chr3 (331-437)||(7346184-7346290)
chr3 (331-433)||(35431335-35431440)
chr3 (395-436)||(35432228-35432269)
chr3 (6-52)||(41585134-41585180)
chr3 (339-375)||(42995617-42995653)
[»] chr5 (5 HSPs)
chr5 (331-436)||(42991340-42991445)
chr5 (331-435)||(32405961-32406064)
chr5 (388-437)||(7495257-7495306)
chr5 (388-436)||(43054376-43054424)
chr5 (395-436)||(42993207-42993248)
[»] chr4 (7 HSPs)
chr4 (331-436)||(55513435-55513540)
chr4 (331-436)||(38134639-38134744)
chr4 (339-374)||(53600241-53600276)
chr4 (387-436)||(53665085-53665134)
chr4 (395-436)||(53664212-53664253)
chr4 (396-437)||(55511901-55511942)
chr4 (396-436)||(45534028-45534068)
[»] scaffold0041 (1 HSPs)
scaffold0041 (336-439)||(10325-10428)
[»] chr2 (6 HSPs)
chr2 (395-436)||(26893482-26893523)
chr2 (395-436)||(26898921-26898962)
chr2 (339-374)||(7075404-7075439)
chr2 (395-436)||(8536893-8536934)
chr2 (388-437)||(26487845-26487894)
chr2 (396-436)||(6852817-6852857)


Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 34716581 - 34716164
Alignment:
Q  1 acattgtgttagtgttggtgataaaaggtaataatcttgagaaagatggttcggtgatggtgacgacgtcggagagggtgaggcagacggcagtgaggag 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34716581 acattgtgttagtgttggtcataaaaggtaataatcttgagaaagatggttcggtgatggtgacgacgtcggagagggtgaggcagacggcagtgaggag 34716482  T
Q  101 gagaggccctttgaataacgacggcagcagcggaagggacggcggtgaggaggagggcgacaattagttgcaaggtgggtttatgaaaatgggtttcggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  34716481 gagaggccctttgaataacgacggcagcagcggaagggacggcggtgaggaggagggcgacaattagttgcaaggtgggtttatgaaaat---------- 34716392  T
Q  201 ttatcctggaaatctgataaagcgcaaattgagcccagcttgaattataat-nnnnnnnttacttgtgggcccgtcgtttttgtcacatgcaccgttaca 299  Q
               |||| |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||||    
T  34716391 ----------catctaataaagcgcaaattgagcccagcttgaattataataaaaaaaattacttgtgggcccgtcgtttttgtcacatgcactgttaca 34716302  T
Q  300 aaaagttaccaagaggttgccgggnnnnnnnttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatgg 399  Q
    ||||||||||||||||||||||||       |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34716301 aaaagttaccaagaggttgccgggaaaaaaattgagtcaatctgaaccattcatttaaaataataatatatcaatgcttggaaatagtactttgtcatgg 34716202  T
Q  400 tgggaaagtattccctctacccaccctaaatgccacca 437  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34716201 tgggaaagtattccctctacccaccctaaatgccacca 34716164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 112 - 436
Target Start/End: Original strand, 10607067 - 10607392
Alignment:
Q  112 tgaataacgacggcagcagcggaagggacggcggtgaggaggagggcgacaattagttgcaaggtgggtttatgaaaatgggtttcgggttatcctggaa 211  Q
    ||||||||||||||   || |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |||    
T  10607067 tgaataacgacggctatagtggaagggacggcggtgaggaggagggcgacaattggttgcaaggtgggtttgtgaaaatgggtttcaggttatcctcgaa 10607166  T
Q  212 atctgataaagcgcaaattgagcccagcttgaattataatnnnnnnn-ttacttgtgggcccgtcgtttttgtcacatgcaccgttacaaaaagttacca 310  Q
    ||||||||||||||||||||||||||||||||||||||||        |||||||| ||  | | ||||||||||||||||| ||||||||||||| |||    
T  10607167 atctgataaagcgcaaattgagcccagcttgaattataataaaaaaaattacttgttggatcatagtttttgtcacatgcactgttacaaaaagttgcca 10607266  T
Q  311 agaggttgccgggnnnnnnnttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtat 410  Q
    ||||||||| |||       |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10607267 agaggttgcagggaaaaaaattgagtgaatctaaaccattcatttaaaataataatatatcaatgcttgaaaatggtactttgtcatggtgggaaagtat 10607366  T
Q  411 tccctctacccaccctaaatgccacc 436  Q
    ||||||||||||||||||||||||||    
T  10607367 tccctctacccaccctaaatgccacc 10607392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 331 - 436
Target Start/End: Original strand, 20688999 - 20689104
Alignment:
Q  331 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 430  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||  ||||||||||||| ||||||||||||  |||||||||||||||    
T  20688999 ttgagtggatctgaaccattcatttaaaataataatatatcaatggtagaaaatgaaactttgtcatggtaggaaagtattcctcctacccaccctaaat 20689098  T
Q  431 gccacc 436  Q
    ||||||    
T  20689099 gccacc 20689104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 331 - 436
Target Start/End: Original strand, 19063493 - 19063598
Alignment:
Q  331 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 430  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||| ||||   ||||||||||||||    
T  19063493 ttgagtggatctgaaccattcatttaaaataataatatatcaatggtagaaaatggaactttgtcatggtgggaaagtcttcctcttacccaccctaaat 19063592  T
Q  431 gccacc 436  Q
    | ||||    
T  19063593 ggcacc 19063598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 19070157 - 19070228
Alignment:
Q  331 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgg 402  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||    
T  19070157 ttgagtggatctgaaccattcatttaaaataataatatatcaatggtagaaaatggaactttgtcatggtgg 19070228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 29382833 - 29382888
Alignment:
Q  381 aaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    |||||| ||||||||||||||| ||||| ||||  |||||||||||||||||||||    
T  29382833 aaatggaactttgtcatggtggaaaagtcttcctcctacccaccctaaatgccacc 29382888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 16249728 - 16249686
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacca 437  Q
    ||||||||||||||||||| |  ||||||||||||||||||||    
T  16249728 catggtgggaaagtattccattgacccaccctaaatgccacca 16249686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 10360398 - 10360434
Alignment:
Q  339 atctgaaccattcatttaaaataataatatatcaatg 375  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  10360398 atctgaaccattgatttaaaataacaatatatcaatg 10360434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 20687504 - 20687464
Alignment:
Q  396 atggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||||||||||||||||  ||||| |||||||||||||||    
T  20687504 atggtgggaaagtattcctcctacctaccctaaatgccacc 20687464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 112 - 436
Target Start/End: Original strand, 42638881 - 42639208
Alignment:
Q  112 tgaataacgacggcagcagcggaagggacggcggtgaggaggagggcgacaattagttgcaaggtg--ggtttatgaaaatgggtttcgggttatcctgg 209  Q
    |||||||||||||||  || |||||||||||||||||||||||||||||||||| |||||||||||  ||||| ||||| |||||||||||||||||||     
T  42638881 tgaataacgacggcaatagtggaagggacggcggtgaggaggagggcgacaattggttgcaaggtgtgggtttgtgaaattgggtttcgggttatcctga 42638980  T
Q  210 aaatctgataaagcgcaaattgagcccagcttgaattataatnnnnnnn-ttacttgtgggcccgtcgtttttgtcacatgcaccgttacaaaaagttac 308  Q
    ||||| ||||||||| ||||||||||||||||||||||||||        |||||||| ||  | ||||||||||||||||||| ||||||||||||| |    
T  42638981 aaatccgataaagcgtaaattgagcccagcttgaattataataaaaaaaattacttgttggatcatcgtttttgtcacatgcactgttacaaaaagttgc 42639080  T
Q  309 caagaggttgccgggnnnnnnnttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagt 408  Q
    ||||||||||| |||       |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  42639081 caagaggttgcagggaaaaaaattgagtgaatctaaaccattcatttaaaataataatatatcaatgcttgaaaatggtactttgtcatggtggaaaagt 42639180  T
Q  409 attccctctacccaccctaaatgccacc 436  Q
    ||||||||||||||||||||||||||||    
T  42639181 attccctctacccaccctaaatgccacc 42639208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 26777808 - 26777772
Alignment:
Q  339 atctgaaccattcatttaaaataataatatatcaatg 375  Q
    |||||||||||||||||||||||||||||||||||||    
T  26777808 atctgaaccattcatttaaaataataatatatcaatg 26777772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 33801540 - 33801499
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  33801540 catggtgggaaagaattccttctacccaccctaaatgccacc 33801499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 436
Target Start/End: Original strand, 33802380 - 33802421
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  33802380 catggtgggaaagaattccttctacccaccctaaatgccacc 33802421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 34364781 - 34364738
Alignment:
Q  393 gtcatggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||||||||||||||||||| |  |||||||||||||||||||    
T  34364781 gtcatggtgggaaagtattccattgacccaccctaaatgccacc 34364738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 38686344 - 38686303
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    |||||||| |||| ||||| ||||||||||||||||||||||    
T  38686344 catggtggaaaagaattccttctacccaccctaaatgccacc 38686303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 39655957 - 39655916
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||||||||||||||||| |  |||||||||||||||||||    
T  39655957 catggtgggaaagtattccattgacccaccctaaatgccacc 39655916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 42638196 - 42638148
Alignment:
Q  388 actttgtcatggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||| ||||||||| |||| |||||  |||||||||||||||||||||    
T  42638196 actttctcatggtggaaaagaattcctcctacccaccctaaatgccacc 42638148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 334 - 436
Target Start/End: Complemental strand, 46813193 - 46813091
Alignment:
Q  334 agtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgcc 433  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||| |||||||| |    
T  46813193 agtgaatctaaaccattcatttaaaataataatatatcaatggttataaatgatactttgtcatggtgggaaagtattccctctacccatcctaaatgtc 46813094  T
Q  434 acc 436  Q
    |||    
T  46813093 acc 46813091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 36846364 - 36846469
Alignment:
Q  1 acattgtgttagtgttggtgataaaaggtaataatcttgagaaagatggttcggtgatggtgacgacgtcggagagggtgaggcagacggcagtgaggag 100  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||| |||||||| ||||   ||||||    
T  36846364 acatggtgttagtgttggtgataaaaggtaataatcttgaggaagatggtttggtgatggtggcgacgccggagaggatgaggcaggcggcgaagaggag 36846463  T
Q  101 gagagg 106  Q
    ||||||    
T  36846464 gagagg 36846469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 331 - 436
Target Start/End: Complemental strand, 37730824 - 37730719
Alignment:
Q  331 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 430  Q
    |||||||||||| |||||||  ||||||||||||||||||||||| ||  |||||||||||| | ||||||||||||||||| | |||||||||||  ||    
T  37730824 ttgagtgaatctaaaccattgctttaaaataataatatatcaatgattaaaaatggtacttttttatggtgggaaagtattctccctacccaccctcgat 37730725  T
Q  431 gccacc 436  Q
    ||||||    
T  37730724 gccacc 37730719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 436
Target Start/End: Complemental strand, 42343401 - 42343296
Alignment:
Q  331 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 430  Q
    |||| ||||| || |||||||| ||| ||||||| |||||||||| ||  || ||  ||||| ||||||| ||||||||||||  |||||||||||||||    
T  42343401 ttgactgaatttggaccattcacttataataatactatatcaatggtttaaagtgacactttttcatggtaggaaagtattcctcctacccaccctaaat 42343302  T
Q  431 gccacc 436  Q
    ||||||    
T  42343301 gccacc 42343296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 31277024 - 31276988
Alignment:
Q  339 atctgaaccattcatttaaaataataatatatcaatg 375  Q
    ||||||||| |||||||||||||||||||||||||||    
T  31277024 atctgaaccgttcatttaaaataataatatatcaatg 31276988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 437
Target Start/End: Original strand, 3821391 - 3821433
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacca 437  Q
    ||||||||||||||||||| |  ||||||||||||||||||||    
T  3821391 catggtgggaaagtattccattgacccaccctaaatgccacca 3821433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 34852598 - 34852557
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    |||||||| |||| ||||| ||||||||||||||||||||||    
T  34852598 catggtggaaaagaattccttctacccaccctaaatgccacc 34852557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 39987575 - 39987534
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||||||||||||||||| |  |||||||||||||||||||    
T  39987575 catggtgggaaagtattccattaacccaccctaaatgccacc 39987534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 34853342 - 34853382
Alignment:
Q  396 atggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||||||||||| ||||  |||||||||||||||||||||    
T  34853342 atggtgggaaagtcttcctcctacccaccctaaatgccacc 34853382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 42344222 - 42344262
Alignment:
Q  396 atggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    |||||||||||| |||||  |||||||||||||||||||||    
T  42344222 atggtgggaaagaattcctcctacccaccctaaatgccacc 42344262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 336 - 436
Target Start/End: Original strand, 51778685 - 51778784
Alignment:
Q  336 tgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgccac 435  Q
    ||||||| |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  51778685 tgaatctaaaccattcatttaaaataataatatatcaatggttataaatggtactttgtcatggtggaaaagta-tccctctacccaccctaaatgccac 51778783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 334 - 436
Target Start/End: Complemental strand, 50353941 - 50353839
Alignment:
Q  334 agtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgcc 433  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||  ||||| |||||| ||||||||||||||||||||||||||||| |||||||| |    
T  50353941 agtgaatctaaaccattcatttaaaataataatatatcaatggttataaatgatactttatcatggtgggaaagtattccctctacccatcctaaatgtc 50353842  T
Q  434 acc 436  Q
    |||    
T  50353841 acc 50353839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 50354989 - 50355044
Alignment:
Q  381 aaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    |||||| |||||  ||||||||||||| |||||  |||||||||||||||||||||    
T  50354989 aaatggaactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 50355044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 38618271 - 38618230
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||||||||||| |||||  |||||||||||||||||||||    
T  38618271 catggtgggaaagaattcctcctacccaccctaaatgccacc 38618230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 42309109 - 42309146
Alignment:
Q  338 aatctgaaccattcatttaaaataataatatatcaatg 375  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  42309109 aatctgaaccattcacttaaaatattaatatatcaatg 42309146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Original strand, 51610228 - 51610269
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    |||||||||||| ||||||  |||||||||||||||||||||    
T  51610228 catggtgggaaaatattcctcctacccaccctaaatgccacc 51610269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 331 - 437
Target Start/End: Complemental strand, 7346290 - 7346184
Alignment:
Q  331 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 430  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||| ||||   ||||||||||||||    
T  7346290 ttgagtggatctgaaccattcatttaaaataataatatatcaatggtagaaaatggaactttgtcatggtgggaaagtcttcctcttacccaccctaaat 7346191  T
Q  431 gccacca 437  Q
    | |||||    
T  7346190 ggcacca 7346184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 331 - 433
Target Start/End: Complemental strand, 35431440 - 35431335
Alignment:
Q  331 ttgagtgaatctgaaccattcatttaaaataataata---tatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccacccta 427  Q
    ||||||| ||||||| |||||||||||||||||||||   |||||||| | | |||||  ||||||||||||||||||||||||||  ||||||||||||    
T  35431440 ttgagtggatctgaatcattcatttaaaataataataatatatcaatgatagaaaatgaaactttgtcatggtgggaaagtattcctcctacccacccta 35431341  T
Q  428 aatgcc 433  Q
    ||||||    
T  35431340 aatgcc 35431335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 436
Target Start/End: Original strand, 35432228 - 35432269
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  35432228 catggtgggaaagaattccttctacccaccctaaatgccacc 35432269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 41585134 - 41585180
Alignment:
Q  6 gtgttagtgttggtgataaaaggtaataatcttgagaaagatggttc 52  Q
    ||||||| |||||||||||| ||||||||| ||||| ||||||||||    
T  41585134 gtgttagcgttggtgataaatggtaataattttgaggaagatggttc 41585180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 42995653 - 42995617
Alignment:
Q  339 atctgaaccattcatttaaaataataatatatcaatg 375  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  42995653 atctgaaccattgatttaaaataacaatatatcaatg 42995617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 331 - 436
Target Start/End: Complemental strand, 42991445 - 42991340
Alignment:
Q  331 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 430  Q
    |||||||||||| |||||||| ||||||||||||||||||||||| ||  |||||||||||| ||||||| | ||||||||| | |||||||||||||||    
T  42991445 ttgagtgaatctaaaccattcctttaaaataataatatatcaatggttaaaaatggtactttttcatggtagaaaagtattctccctacccaccctaaat 42991346  T
Q  431 gccacc 436  Q
    ||||||    
T  42991345 gccacc 42991340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 331 - 435
Target Start/End: Original strand, 32405961 - 32406064
Alignment:
Q  331 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 430  Q
    ||||||| ||||||||||||||||||||||||||||||||||| | | | |||| | ||||||||||||| ||||||| ||||   |||||| |||||||    
T  32405961 ttgagtggatctgaaccattcatttaaaataataatatatcaacggtagaaaatagaactttgtcatggtcggaaagtcttcctcttaccca-cctaaat 32406059  T
Q  431 gccac 435  Q
    |||||    
T  32406060 gccac 32406064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 437
Target Start/End: Original strand, 7495257 - 7495306
Alignment:
Q  388 actttgtcatggtgggaaagtattccctctacccaccctaaatgccacca 437  Q
    ||||| |||||||||||||| |||||| |||||||||||||||| |||||    
T  7495257 actttctcatggtgggaaagaattccccctacccaccctaaatgtcacca 7495306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 43054376 - 43054424
Alignment:
Q  388 actttgtcatggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||||||||||||||||||| ||||  ||||||||| |||||||||||    
T  43054376 actttgtcatggtgggaaagtcttcctcctacccaccttaaatgccacc 43054424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Original strand, 42993207 - 42993248
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    |||||||||| || ||||| ||||||||||||||||||||||    
T  42993207 catggtgggatagaattccttctacccaccctaaatgccacc 42993248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 331 - 436
Target Start/End: Original strand, 55513435 - 55513540
Alignment:
Q  331 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 430  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||  ||||||||||||| ||||||||||||   || |||||||||||    
T  55513435 ttgagtggatctgaaccattcatttaaaataataatatatcaatggtagaaaatgaaactttgtcatggtaggaaagtattcctcatatccaccctaaat 55513534  T
Q  431 gccacc 436  Q
    ||||||    
T  55513535 gccacc 55513540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 331 - 436
Target Start/End: Complemental strand, 38134744 - 38134639
Alignment:
Q  331 ttgagtgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaat 430  Q
    |||| ||||||||||||||||| |||||||||||||||||||||| ||  |||| ||||||| ||||| ||||||| ||||| | || |||| |||||||    
T  38134744 ttgattgaatctgaaccattcagttaaaataataatatatcaatggttaaaaatagtactttctcatgatgggaaaatattctccctccccatcctaaat 38134645  T
Q  431 gccacc 436  Q
    ||||||    
T  38134644 gccacc 38134639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 374
Target Start/End: Complemental strand, 53600276 - 53600241
Alignment:
Q  339 atctgaaccattcatttaaaataataatatatcaat 374  Q
    ||||||||||||||||||||||||||||||||||||    
T  53600276 atctgaaccattcatttaaaataataatatatcaat 53600241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 53665085 - 53665134
Alignment:
Q  387 tactttgtcatggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    |||||| | |||||||||||| ||||| ||||||||||||||||||||||    
T  53665085 tacttttttatggtgggaaagaattccttctacccaccctaaatgccacc 53665134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 53664253 - 53664212
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||||||||||| ||||| |||||||||||||||| |||||    
T  53664253 catggtgggaaagaattccttctacccaccctaaataccacc 53664212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 55511942 - 55511901
Alignment:
Q  396 atggtgggaaagtattccctctacccaccctaaatgccacca 437  Q
    ||||||||||||||||||  ||||| ||||||||||||||||    
T  55511942 atggtgggaaagtattcctcctacctaccctaaatgccacca 55511901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 45534068 - 45534028
Alignment:
Q  396 atggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||||||||| | ||||| |||||||||||||||||||||    
T  45534068 atggtgggaaaatcttccccctacccaccctaaatgccacc 45534028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 439
Target Start/End: Original strand, 10325 - 10428
Alignment:
Q  336 tgaatctgaaccattcatttaaaataataatatatcaatgcttggaaatggtactttgtcatggtgggaaagtattccctctacccaccctaaatgccac 435  Q
    ||||||||||||||||| |||||||||||||||||||||| ||  |||||||||| | ||||  ||||||||||||| | ||  ||| ||||||||||||    
T  10325 tgaatctgaaccattcagttaaaataataatatatcaatgattaaaaatggtactatctcataatgggaaagtattctccctgtccatcctaaatgccac 10424  T
Q  436 cagt 439  Q
    ||||    
T  10425 cagt 10428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 26893523 - 26893482
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  26893523 catggtgggaaagaattccttctacccaccctaaatgccacc 26893482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 26898962 - 26898921
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  26898962 catggtgggaaagaattccttctacccaccctaaatgccacc 26898921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 374
Target Start/End: Original strand, 7075404 - 7075439
Alignment:
Q  339 atctgaaccattcatttaaaataataatatatcaat 374  Q
    ||||||||| ||||||||||||||||||||||||||    
T  7075404 atctgaaccgttcatttaaaataataatatatcaat 7075439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Original strand, 8536893 - 8536934
Alignment:
Q  395 catggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    |||||| |||||| ||||| ||||||||||||||||||||||    
T  8536893 catggtaggaaagaattccttctacccaccctaaatgccacc 8536934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 437
Target Start/End: Original strand, 26487845 - 26487894
Alignment:
Q  388 actttgtcatggtgggaaagtattccctctacccaccctaaatgccacca 437  Q
    ||||| ||||||| |||||| |||||  ||||||||||||||||||||||    
T  26487845 actttctcatggtaggaaagaattcctcctacccaccctaaatgccacca 26487894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 6852817 - 6852857
Alignment:
Q  396 atggtgggaaagtattccctctacccaccctaaatgccacc 436  Q
    |||||||||||| |||||  |||||||||||||||||||||    
T  6852817 atggtgggaaagaattcctcctacccaccctaaatgccacc 6852857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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