View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_30 (Length: 442)
Name: NF19382_low_30
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 13239678 - 13239934
Alignment:
| Q |
9 |
aatatgtaaactcatgtcaggatttagatgtggctgatgtagctattatttcatttgtctatatatagaagaaaatgtagttaatcataaaaatatatgt |
108 |
Q |
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| T |
13239678 |
aatatgtaaactcatgtcaggatttagatgtggctgatgtagctattatttcatttgtctatatatagaagaaaatgtagttaatcataaaaatatatgt |
13239777 |
T |
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| Q |
109 |
agtcagaagtgcatttagaaaaaggtagttaagtgcattaagaagttaacaactcactgcatggtttgagttttcatnnnnnnncatgggcatatttaat |
208 |
Q |
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| T |
13239778 |
agtcagaagtgcatttagaaaaaggtagttaagtgcattaagaagttaacaactcactgcatggtttgagttttca-gaaaaaacatgggcatatttaat |
13239876 |
T |
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| Q |
209 |
acaaaatttgtattatgcattcttaaacatgtactcttatgatacatgttagcatttt |
266 |
Q |
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| T |
13239877 |
acaaaatttgtattatgcattcttcaatatgtacccttatgatacatgttagtatttt |
13239934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 317 - 427
Target Start/End: Original strand, 13240043 - 13240153
Alignment:
| Q |
317 |
tttggattatcgatttaagataagttgcaacttggtattgttgattttgaaataattataatttaattcataccaatcatctttttaatttgttcgaaga |
416 |
Q |
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| T |
13240043 |
tttgaattatcgatttaagataatttgcaacttggtattgttgattttgaaataattataatttaattcataccaatcatctgtttaatttgttcgaaga |
13240142 |
T |
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| Q |
417 |
attcatatatt |
427 |
Q |
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| T |
13240143 |
attcatatatt |
13240153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 317 - 372
Target Start/End: Original strand, 13239983 - 13240038
Alignment:
| Q |
317 |
tttggattatcgatttaagataagttgcaacttggtattgttgattttgaaataat |
372 |
Q |
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| T |
13239983 |
tttgaattatcgatttaagataatttgcaacttggtattgttgattttgaaataat |
13240038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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