View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_low_33 (Length: 432)

Name: NF19382_low_33
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_low_33
NF19382_low_33
[»] chr1 (5 HSPs)
chr1 (226-282)||(5716102-5716158)
chr1 (177-215)||(5716044-5716082)
chr1 (367-414)||(5716243-5716289)
chr1 (177-212)||(17744041-17744076)
chr1 (367-413)||(17743746-17743792)


Alignment Details
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 5716102 - 5716158
Alignment:
Q  226 caaataaatttttgtccgttataaagtaatgaactaacaaaacaaaattagaataag 282  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5716102 caaataaatttttgtcggttataaagtaatgaactaacaaaacaaaattagaataag 5716158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 5716044 - 5716082
Alignment:
Q  177 atgattttccatgagttggcaacgactgtaatcaatgat 215  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5716044 atgattttccatgagttggcaacgactgtaatcaatgat 5716082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 414
Target Start/End: Original strand, 5716243 - 5716289
Alignment:
Q  367 ggaattatcttcttttaaaagaatttttaaataatctactgttacgtt 414  Q
    ||||||||||| ||||||||||||||||||||||| |||| |||||||    
T  5716243 ggaattatctt-ttttaaaagaatttttaaataatttactattacgtt 5716289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 212
Target Start/End: Complemental strand, 17744076 - 17744041
Alignment:
Q  177 atgattttccatgagttggcaacgactgtaatcaat 212  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17744076 atgattttccatgagttggcaacgactataatcaat 17744041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 413
Target Start/End: Complemental strand, 17743792 - 17743746
Alignment:
Q  367 ggaattatcttcttttaaaagaatttttaaataatctactgttacgt 413  Q
    |||||| |||| |||| ||||||||||||||||||||||| ||||||    
T  17743792 ggaattctctttttttgaaagaatttttaaataatctactattacgt 17743746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University