View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19382_low_34 (Length: 431)
Name: NF19382_low_34
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 12 - 415
Target Start/End: Complemental strand, 24217809 - 24217406
Alignment:
| Q |
12 |
atcatcaaggttgggtaagatgtagtcagcgccgctaccaacgttaatagaaataagattgttgtaggaaagatcaagggaaaatagttttctaaaattt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24217809 |
atcatcaaggttgggtaagatgtagtcagcgccgctaccaacgttaatagaaataagattattgtaggaaagatcaagggaaaatagttttctaaaattt |
24217710 |
T |
|
| Q |
112 |
gaaaattggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcacctt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24217709 |
gaaaattggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcacctt |
24217610 |
T |
|
| Q |
212 |
gcagattgttattagacagaaatagaaggctcaaattataagttgagaattcaccaatcgaacctgttatttggttgtcactaagatccaactctaacaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24217609 |
gcagattgttattagacagaaatagaaggctcaaattataagttgagaattcaccaatcgaacctgttatttggttgtcactaagatccaactctaacaa |
24217510 |
T |
|
| Q |
312 |
cgaaggcaaggaataacaccattgcggaattgttccatttaacatgttattacccaaatttagaaacttcaattttgaatgtttagtgttttcagatgga |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24217509 |
cgaaggcaaggaataacaccattgcggaattgttccatttaacatgttattacccaaatttagaaacttcaattttgaatgtttagtgttttcagatgga |
24217410 |
T |
|
| Q |
412 |
atgg |
415 |
Q |
| |
|
|||| |
|
|
| T |
24217409 |
atgg |
24217406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 359
Target Start/End: Complemental strand, 16842848 - 16842598
Alignment:
| Q |
109 |
tttgaaaattggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcac |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||| || || ||| | ||||||||| || | | |||||||||||| ||||| | |
|
|
| T |
16842848 |
tttgaaaattggtgaaaatccacaacaccactcaagtttgttgatgataaatctagggcggtaagattttggagttcaaatattgaatttggaaaatggc |
16842749 |
T |
|
| Q |
209 |
cttgcagattgttattagacagaaatagaaggc-tcaaattataagttgagaattcaccaatcgaacctgttatttggttgtcactaagatccaactcta |
307 |
Q |
| |
|
|||| || ||||||||||| ||| | | ||| | ||||| ||| |||||||| |||||||| | ||||| | ||||||| | ||| ||||| || |
|
|
| T |
16842748 |
cttgtaggttgttattagagagataca-aagacttcaaagaatatgttgagaactcaccaatgaaccctgtgagatggttgtagcgaagggacaacttta |
16842650 |
T |
|
| Q |
308 |
acaacgaaggcaaggaataacaccattgcggaattgttccatttaacatgtt |
359 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
16842649 |
acaacgaaggcaaagaataacaccaatttggaattgttccatttaacatgtt |
16842598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 9e-74; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 73 - 413
Target Start/End: Complemental strand, 37382343 - 37382003
Alignment:
| Q |
73 |
ttgtaggaaagatcaagggaaaatagttttctaaaatttgaaaattggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaa |
172 |
Q |
| |
|
|||| ||||||||||||| ||||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| || || |
|
|
| T |
37382343 |
ttgtgggaaagatcaaggaaaaatagcttcttacaatttgaaaattggtgaaagtccacaacaccactcaagttggttgatgacaatcctaagtcaaaaa |
37382244 |
T |
|
| Q |
173 |
gattttgaagcttatatattgaatttgaaaaatcaccttgcagattgttattagacagaaatagaaggctcaaattataagttgagaattcaccaatcga |
272 |
Q |
| |
|
||||||| | |||||||||||||||| ||||||||||| | ||||||||||| ||||||||| |||| |||||| ||||||||||||||||| |
|
|
| T |
37382243 |
gattttgtaatttatatattgaatttggaaaatcaccttttatgttgttattagagagaaatagatatatcaaggaataagtcgagaattcaccaatcga |
37382144 |
T |
|
| Q |
273 |
acctgttatttggttgtcactaagatccaactctaacaacgaaggcaaggaataacaccattgcggaattgttccatttaacatgttattacccaaattt |
372 |
Q |
| |
|
|||||||| |||||||||| |||||||||| |||| ||| |||| ||||||||||||||| | ||||||| |||||||||||| |||||| |||| | |
|
|
| T |
37382143 |
acctgttagttggttgtcattaagatccaattctaccaatgaagtcaaggaataacaccagggtggaattgctccatttaacatattattagccaatgct |
37382044 |
T |
|
| Q |
373 |
agaaacttcaattttgaatgtttagtgttttcagatggaat |
413 |
Q |
| |
|
|||| | |||||||||||||||||| |||||| |||||| |
|
|
| T |
37382043 |
agaagatataattttgaatgtttagtgatttcagttggaat |
37382003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 37639967 - 37640312
Alignment:
| Q |
16 |
tcaaggttgggtaagatgtagtcagcgccgctaccaacgttaatagaaataagattgttgtaggaaagatcaagggaaaatagttttctaaaatttgaaa |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||| ||| ||| ||||||| || | | || | |||||||||||||||| |||||| | || ||||||| |
|
|
| T |
37639967 |
tcaaggttgggtaagatggagtcagcactgctatcaatgttgatagaaagaaaactattatgggaaagatcaagggaacttagtttgtttaattttgaaa |
37640066 |
T |
|
| Q |
116 |
attggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcaccttgcag |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||| |||| || ||||||||| || | | |||||||||||| ||||| |||||| || |
|
|
| T |
37640067 |
attggtgaaaatccacaacaccactcaagtttgttgatgacaaatctaagtaagtaagattttggagttgaaatattgaatttggaaaatgaccttgtag |
37640166 |
T |
|
| Q |
216 |
attgttattagacagaaatagaaggct-caaattataagttgagaattcaccaatcgaacctgttatttggttgtcactaagatccaactctaacaacga |
314 |
Q |
| |
|
||||||||| | ||| | | ||| | |||| ||| |||||||| |||||||| | ||||| | | ||||||||| || | ||||||||||||||| |
|
|
| T |
37640167 |
gttgttattaaagagataca-aagattgcaaagaatatgttgagaactcaccaatgaaccctgtgagattgttgtcactgaggtacaactctaacaacga |
37640265 |
T |
|
| Q |
315 |
aggcaaggaataacaccattgcggaattgttccatttaacatgttat |
361 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
37640266 |
aggcaaagaataacaccaatgtggaattgttccatttaacatgttat |
37640312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 109 - 361
Target Start/End: Original strand, 37711812 - 37712064
Alignment:
| Q |
109 |
tttgaaaattggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcac |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||| |||| || ||||||||| || | | |||||||||||| ||||| || |
|
|
| T |
37711812 |
tttgaaaattggtgaaaatccacaacaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttgaaatattgaatttggaaaatgac |
37711911 |
T |
|
| Q |
209 |
cttgcagattgttattagacagaaatagaaggct-caaattataagttgagaattcaccaatcgaacctgttatttggttgtcactaagatccaactcta |
307 |
Q |
| |
|
|||| || ||||||||||| ||| | ||| | |||| ||| |||||||| |||||||| | ||||| | |||||||| || || ||||||||| |
|
|
| T |
37711912 |
cttgtaggttgttattagagagatcca-aagattgcaaagaatatgttgagaactcaccaatgaaccctgtgaggtggttgtcgctgaggcccaactcta |
37712010 |
T |
|
| Q |
308 |
acaacgaaggcaaggaataacaccattgcggaattgttccatttaacatgttat |
361 |
Q |
| |
|
|||| |||||||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
37712011 |
acaatgaaggcaaagaataacaccactgtggaattgttccatttaacatgttat |
37712064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 37823992 - 37824334
Alignment:
| Q |
18 |
aaggttgggtaagatgtagtcagcgccgctaccaacgttaatagaaataagattgttgtaggaaagatcaagggaaaatagttttctaaaatttgaaaat |
117 |
Q |
| |
|
|||||||||||||||| ||||||| | |||| || ||| |||| || || | | |||| |||||| | |||||| |||||| | || ||||||||| |
|
|
| T |
37823992 |
aaggttgggtaagatggagtcagcactgctatcagtgttgatagcaagaaaagtattgtgtgaaagaacgagggaatttagtttgtttaattttgaaaat |
37824091 |
T |
|
| Q |
118 |
tggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcaccttgcagat |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||| |||| | | ||||||||| || | | |||||||||||| ||||| |||| | || | |
|
|
| T |
37824092 |
tggtgaaaatccacaacaccactcaagtttgttgatgacaaaattaactcggtaagattttggagttgaaatattgaatttggaaaatgacctcgtaggt |
37824191 |
T |
|
| Q |
218 |
tgttattagacagaaatagaaggctcaaattataagttgagaattcaccaatcgaacctgttatttggttgtcactaagatccaactctaacaacgaagg |
317 |
Q |
| |
|
|||||||||| ||| | | |||| ||| ||||| || |||||||| | ||||| | |||||||| || || ||||||||||||||||||| |
|
|
| T |
37824192 |
tgttattagagagatccaaatattgcaaagaatatgttgaaaactcaccaatgaaccctgtgaggtggttgtcgctgaggcccaactctaacaacgaagg |
37824291 |
T |
|
| Q |
318 |
caaggaataacaccattgcggaattgttccatttaacatgtta |
360 |
Q |
| |
|
||| ||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
37824292 |
caaagaataacaccaatgtggaattgttccatttaacatgtta |
37824334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 37702764 - 37703108
Alignment:
| Q |
17 |
caaggttgggtaagatgtagtcagcgccgctaccaacgttaatagaaataagattgttgtaggaaagatcaagggaaaatagttttctaaaatttgaaaa |
116 |
Q |
| |
|
||||||||||||||||| ||||||| | |||| ||| ||| |||||||||| | | |||| |||||| |||||| ||||||| | || |||||||| |
|
|
| T |
37702764 |
caaggttgggtaagatggagtcagcactgctatcaatgttgatagaaataaaactattgtgtgaaagaatgagggaatttagtttttttaattttgaaaa |
37702863 |
T |
|
| Q |
117 |
ttggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcaccttgcaga |
216 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |||| ||||| |||| | ||||||||| || | |||||||||||||| ||||| ||| || || |
|
|
| T |
37702864 |
ttggtgaaaatccacgacaccactcaagtttgttgacgacaaatctaagttggtaagattttggagttcatatattgaatttggaaaatgaccatgtagg |
37702963 |
T |
|
| Q |
217 |
ttgttattagacagaaatagaaggct-caaattataagttgagaattcaccaatcgaacctgttatttggttgtcactaagatccaactctaacaacgaa |
315 |
Q |
| |
|
|||||| |||| ||| | ||| | |||| ||| |||||||| |||||||| | ||||| | |||||||| | || ||||| ||||||||||| |
|
|
| T |
37702964 |
ttgttactagagagatcca-aagattgcaaagaatatgttgagaactcaccaatgaaccctgtgaggtggttgtcgccgaggaccaaccctaacaacgaa |
37703062 |
T |
|
| Q |
316 |
ggcaaggaataacaccattgcggaattgttccatttaacatgttat |
361 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
37703063 |
ggcaaagaataacaccaatgtggaattgttccatttaacatgttat |
37703108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 37533196 - 37533540
Alignment:
| Q |
17 |
caaggttgggtaagatgtagtcagcgccgctaccaacgttaatagaaataagattgttgtaggaaagatcaagggaaaatagttttctaaaatttgaaaa |
116 |
Q |
| |
|
||||||||||||||||| ||||| | |||| || ||| ||||||| || | | || | |||||||||||||||| |||||| | || |||||||| |
|
|
| T |
37533196 |
caaggttgggtaagatggagtcaacattgctattaatgttgatagaaagaaaactattatgggaaagatcaagggaacctagtttgtttaattttgaaaa |
37533295 |
T |
|
| Q |
117 |
ttggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcaccttgcaga |
216 |
Q |
| |
|
||||||||| |||||||||||||| ||||| | |||||||| |||| | | ||||||||| || | | |||||||||||| ||||| |||||| || |
|
|
| T |
37533296 |
ttggtgaaaatccacaacaccacttaagtttgtggatgacaaatataagtcggtaagattttggagttgaaatattgaatttggaaaatgaccttgtagg |
37533395 |
T |
|
| Q |
217 |
ttgttattagacagaaatagaaggctcaaattataagttgagaattcaccaatcgaacctgttatttggttgtcactaagatccaactctaacaacgaag |
316 |
Q |
| |
|
||||||||||| ||| | | |||| ||| ||||| || |||||||| | ||||| | ||||||| || || | |||||||||||||||| |
|
|
| T |
37533396 |
ttgttattagagagatccaaatattgcaaagaatatgttgaaaactcaccaatgaaccctgtgaggtggttgttgctgaggtgtaactctaacaacgaag |
37533495 |
T |
|
| Q |
317 |
gcaaggaataacaccattgcggaattgttccatttaacatgttat |
361 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
37533496 |
gcaaagaataacaccaatgtggaattgttccatttaacatgttat |
37533540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 109 - 361
Target Start/End: Original strand, 37594512 - 37594764
Alignment:
| Q |
109 |
tttgaaaattggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcac |
208 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||| |||||||||| ||||| || |||||||| || | | |||||||||||| ||||| || |
|
|
| T |
37594512 |
tttgaaaattggtgaaaatcgacaacaccactcaagttggttgatgacaaagttaagtaagatagattttggagttgaaatattgaatttggaaaatgac |
37594611 |
T |
|
| Q |
209 |
cttgcagattgttattagacagaaatagaaggctcaaattataagttgagaattcaccaatcgaacctgttatttggttgtcactaagatccaactctaa |
308 |
Q |
| |
|
| || || |||||||||| ||||| | | |||| ||| ||||| || |||||||| | ||||| | | ||||| || || | ||| ||||| |
|
|
| T |
37594612 |
catgtaggctgttattagagagaaacaaatattgcaaagaatatgttgaaaactcaccaatgaaccctgtaagattgttgttgctgaggtacaattctaa |
37594711 |
T |
|
| Q |
309 |
caacgaaggcaaggaataacaccattgcggaattgttccatttaacatgttat |
361 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
37594712 |
caacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttat |
37594764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 37413321 - 37413105
Alignment:
| Q |
16 |
tcaaggttgggtaagatgtagtcagcgccgctaccaacgttaatagaaataagattgttgtaggaaagatcaagggaaaatagttttctaaaatttgaaa |
115 |
Q |
| |
|
|||||||||||| ||||| ||||| | | |||||||| ||| | ||||| || ||||||| ||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
37413321 |
tcaaggttgggtgagatggagtcaacactgctaccaatgttgacagaaagaaaattgttgcgggaaagatcaaggaaagttagtttttcaaaatttgaaa |
37413222 |
T |
|
| Q |
116 |
attggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcaccttgcag |
215 |
Q |
| |
|
|||| |||||||||||| | || ||||||| |||||||||| | |||| || ||||||||| | ||| |||||||||||| ||||| ||| || | |
|
|
| T |
37413221 |
attgatgaaagtccacatcgccgttcaagtttgttgatgacaaacctaagtaagtaagattttggaatttaaatattgaatttggaaaatgaccatgtaa |
37413122 |
T |
|
| Q |
216 |
attgttattagacagaa |
232 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
37413121 |
cttgttattagagagaa |
37413105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 37400941 - 37400727
Alignment:
| Q |
18 |
aaggttgggtaagatgtagtcagcgccgctaccaacgttaatagaaataagattgttgtaggaaagatcaagggaaaatagttttctaaaatttgaaaat |
117 |
Q |
| |
|
|||||||||||||||| ||||||| | |||| ||| ||| ||||||| || | | || | |||||||| || | ||||||| | || ||||||||| |
|
|
| T |
37400941 |
aaggttgggtaagatggagtcagcactgctatcaatgttgatagaaagaaaactattatgggaaagatggagaaaccatagtttgtttaattttgaaaat |
37400842 |
T |
|
| Q |
118 |
tggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcaccttgcagat |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||| |||| || ||||||||| || | | |||||||||||| ||||| |||||| || | |
|
|
| T |
37400841 |
tggtgaaaatccacaacaccactcaagtttgttgatgacaaatctaagtaagtaagattttggagttcaaatattgaatttggaaaatgaccttgtaggt |
37400742 |
T |
|
| Q |
218 |
tgttattagacagaa |
232 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
37400741 |
tgttattagagagaa |
37400727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 37400593 - 37400524
Alignment:
| Q |
300 |
caactctaacaacgaaggcaaggaataacaccattgcggaattgttccatttaacatgttattacccaaa |
369 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||| |
|
|
| T |
37400593 |
caactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttatcacccaaa |
37400524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 37435802 - 37436147
Alignment:
| Q |
16 |
tcaaggttgggtaagatgtagtcagcgccgctaccaacgttaatagaaataagattgttgtaggaaagatcaagggaaaatagttttctaaaatttgaaa |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||| | ||| ||||||| || | | |||| ||||||| ||| || ||| ||| ||| ||||||| |
|
|
| T |
37435802 |
tcaaggttgggtaagatggagtcagcactgctattagtgttgatagaaagaaaactattgtgcgaaagattgaggagaattagatttttaagttttgaaa |
37435901 |
T |
|
| Q |
116 |
attggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcaccttgcag |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||| ||| ||| ||||||||| || | | |||||||||||||||||| ||||| || |
|
|
| T |
37435902 |
attggtgaaaatccacaacaccactcaagtttgttgatgacaaatctaattcagtaagattttggagttgaaatattgaatttgaaaaatgaccttctag |
37436001 |
T |
|
| Q |
216 |
attgttattagacagaaatagaaggct-caaattataagttgagaattcaccaatcgaacctgttatttggttgtcactaagatccaactctaacaacga |
314 |
Q |
| |
|
|||||||| || || | | ||| | ||| ||| ||||| || |||||||| | ||||| | ||||||| | || | |||||||||||| || |
|
|
| T |
37436002 |
gttgttatttgagag-agtcaaagattgaaaagaatatgttgaaaactcaccaatgaaccctgtgagatggttgtaatggaggtacaactctaacaatga |
37436100 |
T |
|
| Q |
315 |
aggcaaggaataacaccattgcggaattgttccatttaacatgttat |
361 |
Q |
| |
|
|||||| |||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
37436101 |
aggcaaataataacaccactgtggaattgttccatttaacatgttat |
37436147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 37696895 - 37697027
Alignment:
| Q |
95 |
atagttttctaaaatttgaaaattggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattga |
194 |
Q |
| |
|
|||||||| | || ||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| | | ||| ||||| || | | ||||||| |
|
|
| T |
37696895 |
atagtttttttaattttgaaaattggtgaaaatccacaacaccactcaagttggttgatgacaaatataactcggtaaggttttggagttgaaatattga |
37696994 |
T |
|
| Q |
195 |
atttgaaaaatcaccttgcagattgttattaga |
227 |
Q |
| |
|
||||| ||||| |||||| || ||||||||||| |
|
|
| T |
37696995 |
atttggaaaatgaccttgtaggttgttattaga |
37697027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 360
Target Start/End: Complemental strand, 37392864 - 37392613
Alignment:
| Q |
109 |
tttgaaaattggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcac |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |||| ||||| |||| | ||||||||| || | | |||||||||||| ||||| || |
|
|
| T |
37392864 |
tttgaaaattggtgaaaatccacaacaccacttaagtttgttgaagacaaatctaagttggtaagattttggagttcaaatattgaatttggaaaatgac |
37392765 |
T |
|
| Q |
209 |
cttgcagattgttattagacagaaatagaaggct-caaattataagttgagaattcaccaatcgaacctgttatttggttgtcactaagatccaactcta |
307 |
Q |
| |
|
| || || |||||||| || ||| | | ||| | |||| ||||||||| || ||| |||| | ||||| | ||||||||| | || |||||||||| |
|
|
| T |
37392764 |
catgtaggttgttatttgagagataca-aagattgcaaagaataagttgaaaactcatcaatgaaccctgtgagatggttgtcattgaggtccaactcta |
37392666 |
T |
|
| Q |
308 |
acaacgaaggcaaggaataacaccattgcggaattgttccatttaacatgtta |
360 |
Q |
| |
|
|| |||||||| ||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
37392665 |
ttaatgaaggcaaagaataacaccactgcggaattgtaccattaaacatgtta |
37392613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 37697172 - 37697227
Alignment:
| Q |
306 |
taacaacgaaggcaaggaataacaccattgcggaattgttccatttaacatgttat |
361 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
37697172 |
taacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttat |
37697227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 353
Target Start/End: Original strand, 37429067 - 37429164
Alignment:
| Q |
256 |
gagaattcaccaatcgaacctgttatttggttgtcactaagatccaactctaacaacgaaggcaaggaataacaccattgcggaattgttccatttaa |
353 |
Q |
| |
|
||||| |||||||| || ||||| | |||||| ||| | |||| |||| | ||||||||||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
37429067 |
gagaactcaccaattgaccctgtgagttggttatcattgagatacaaccatgacaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa |
37429164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 363
Target Start/End: Complemental strand, 37413088 - 37412974
Alignment:
| Q |
249 |
ataagttgagaattcaccaatcgaacctgttatttggttgtcactaagatccaactctaacaacgaaggcaaggaataacaccattgcggaattgttcca |
348 |
Q |
| |
|
|||||||||||| || ||||| || ||| | | ||||||||||| || | ||||||||| || ||| ||| |||||||||| || ||| |||||||| |
|
|
| T |
37413088 |
ataagttgagaactctccaatggaccctctgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttcca |
37412989 |
T |
|
| Q |
349 |
tttaacatgttatta |
363 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
37412988 |
tttaacattttatta |
37412974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 14553206 - 14553550
Alignment:
| Q |
17 |
caaggttgggtaagatgtagtcagcgccgctaccaacgttaatagaaataagattgttgtaggaaagatcaagggaaaatagttttctaaaatttgaaaa |
116 |
Q |
| |
|
||||||||||||||||| ||| ||| | |||| ||| ||| |||||||||| | | |||| |||||||| |||||| ||||||| | || |||||||| |
|
|
| T |
14553206 |
caaggttgggtaagatggagttagcactgctatcaatgttgatagaaataaaactattgtgtgaaagatcgagggaatttagtttttttaattttgaaaa |
14553305 |
T |
|
| Q |
117 |
ttggtgaaagtccacaacaccactcaagttgtttgatgacaagcttaaggcagcaagattttgaagcttatatattgaatttgaaaaatcaccttgcaga |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||| | |||||||| |||| | | ||||||||| || | | |||||||||||| ||||| |||||| || |
|
|
| T |
14553306 |
ttggtgaaaatccacaacaccactcaagtttgtggatgacaaatataagtcggtaagattttggagttcaaatattgaatttggaaaatgaccttgtagg |
14553405 |
T |
|
| Q |
217 |
ttgttattagacagaaatagaaggct-caaattataagttgagaattcaccaatcgaacctgttatttggttgtcactaagatccaactctaacaacgaa |
315 |
Q |
| |
|
|||||||| || ||| | ||| | |||| ||||||||| || |||||||| | ||||| | |||||||| || || ||||||||||||||| |
|
|
| T |
14553406 |
ttgttatttgagagatcca-aagattgcaaagaataagttgaaaactcaccaatgaaccctgtgaggtggttgtcgctgagggataactctaacaacgaa |
14553504 |
T |
|
| Q |
316 |
ggcaaggaataacaccattgcggaattgttccatttaacatgttat |
361 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
14553505 |
ggcaaagaataacaccaatgtggaattgttccatttaacatgttat |
14553550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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