View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_36 (Length: 421)
Name: NF19382_low_36
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 128 - 401
Target Start/End: Complemental strand, 13266571 - 13266298
Alignment:
| Q |
128 |
cataggatcaaaattaatggctgtgatctaatttttgctaaacatgctcatacactttgtttcctttttcattcaggccgtttaatattctttgtgtatt |
227 |
Q |
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| T |
13266571 |
catagaatcaaaattaatggctgtgatctaatttttgctaaacatgctcatccactttgtttcctttttcattcaggccgtttaatattctttgtgcatt |
13266472 |
T |
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| Q |
228 |
ttgttctgaaatcttctcctagtgaattgtggatcttaaaacaaacagaaaaattatctcctgtttttaagtttatgaacacgattaaaagaaactgctt |
327 |
Q |
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| T |
13266471 |
ttgttctgaaatcttctccaagtgaatcgtggatcttaaaacaaacagaaaaattatctcccatttttaagtttatgaacacgattaagagaaactgctt |
13266372 |
T |
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| Q |
328 |
tagatacaataattatacaagctattgtgtatgtcgtcttgtcgcatgaacatctcagtcatattactcaaaga |
401 |
Q |
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| T |
13266371 |
tagatacaataattatacaagctattgtgtatgtcgtcttctcgcacgaacatctcagtcatattactcaaaga |
13266298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 13245340 - 13245279
Alignment:
| Q |
2 |
tcttgtactgatgctcaccctgtgtcactaaagttttattttgtgtaagagtttcatagctt |
63 |
Q |
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| T |
13245340 |
tcttgtagtgatggtcaccctgtgtcactaaagttttattttgcgcaagagtttcatagctt |
13245279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 13266625 - 13266567
Alignment:
| Q |
2 |
tcttgtactgatgctcaccctgtgtcactaaagttttattttgtgtaagagtttcatag |
60 |
Q |
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| T |
13266625 |
tcttgtagtgatggtcactctgtgtcactaaagttttattttgcgtaagagtttcatag |
13266567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 55337633 - 55337591
Alignment:
| Q |
73 |
gcatatcaagtgagaggagtaattattagaagagatgagagga |
115 |
Q |
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| T |
55337633 |
gcatatcaagtgagaggagtaattataatgagagatgagagga |
55337591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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