View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_37 (Length: 414)
Name: NF19382_low_37
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 404
Target Start/End: Original strand, 15921892 - 15922276
Alignment:
| Q |
20 |
aagttcaagaatttcaaccgttgttccagcaacaccacgatgtgaagaaaaaggtgaacacaacctaaactacatggacttgttgatgaagcttcactat |
119 |
Q |
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| T |
15921892 |
aagttcaagaatttcaaccgttgttccagcaacaccacgatgtgaagaaaaaggtgaacacaacctaaactacatggacttgttgatgaagcttcactat |
15921991 |
T |
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| Q |
120 |
gtccggtccatttacttcttcgattctgaagctgttcaaggccttacaatatccgatttaaaaacaccgatgtttccactgctggatttgtactcacatg |
219 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15921992 |
gtccggtccatttatttcttcgattctgaagctgttcaaggccttacaatatccgatttaaaaacaccgatgtttccactgctggatttgtactcgcatg |
15922091 |
T |
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| Q |
220 |
ttgccggtcgagttagaatagccaaatccggcagaccgtttatcaaatgcaatgatgccggtgtgcgaatcgcggagtcgcagtgtgataaaacgctgag |
319 |
Q |
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| T |
15922092 |
ttgccggtcgagttagaatagccaaatccggcagaccgtttatcaaatgcaatgatgccggtgtgcgaatcgcggagtcgcagtgtgataaaacgctgag |
15922191 |
T |
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| Q |
320 |
ggaatggttggatgaaaatgagtattcagttgatgaacttgttcatgatcatgtgcttggtcctgatcttgctttttctcctttg |
404 |
Q |
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| T |
15922192 |
ggaatggttggatgaaaatgagtattcagttgatgaacttgttcatgatcatgtgcttggtcctgatcttgctttttctcctttg |
15922276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 46009255 - 46009641
Alignment:
| Q |
18 |
caaagttcaagaatttcaaccgttgttccagcaacaccacgatgtgaagaaaaaggtgaacacaacctaaactacatggacttgttgatgaagcttcact |
117 |
Q |
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| T |
46009255 |
caaatttcaagaatttcaacagtagttccagcaacccctcgtggtgaagaaaatagtgcatataatctcaactacatggacctgcttatgaaactccact |
46009354 |
T |
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| Q |
118 |
atgtccggtccatttacttcttcgattctgaagctgttcaaggccttacaatatccgatttaaaaacaccgatgtttccactgctggatttgtactcaca |
217 |
Q |
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|| |||| ||||| ||||| ||| ||||| |||| |||||| ||| ||||||| || |||||| |||| ||||||| ||| || |||| |||||||| |
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| T |
46009355 |
atatccgatccatatacttgttcaattctaaagcggttcaaaacctctcaatatctgacttaaaagcaccaatgtttcaactacttgattcatactcaca |
46009454 |
T |
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| Q |
218 |
tgttgccggtcgagttagaatagccaaatccggcagaccgtttatcaaatgcaatgatgccggtgtgcgaatcgcggagtcgcagtgtgataaaacgctg |
317 |
Q |
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| T |
46009455 |
tgtttcaggtagggttagaatatcagaatcaggaagaccgtttatcaagtgcaacgacgcgggtgtgcgaatagcagagtcacactgtgagaaaacactg |
46009554 |
T |
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| Q |
318 |
agggaatggttggatgaaaatgagtattcagttgatgaacttgttcatgatcatgtgcttggtcctgatcttgctttttctcctttg |
404 |
Q |
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| T |
46009555 |
cgtgaatggttggatgagaaagagtactctgttgatgaacttgtatatgatcatgtgcttggtcctgatcttgcattttctcctttg |
46009641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 400
Target Start/End: Original strand, 13114382 - 13114570
Alignment:
| Q |
212 |
ctcacatgttgccggtcgagttagaatagccaaatccggcagaccgtttatcaaatgcaatgatgccggtgtgcgaatcgcggagtcgcagtgtgataaa |
311 |
Q |
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|||||||||| | ||||| |||||||| | |||| || |||||||||||||| ||||| ||||| || || || | || ||| | | |||||||||| |
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| T |
13114382 |
ctcacatgtttcaggtcggattagaatactcgaatctggaagaccgtttatcaagtgcaacgatgcaggagtacgcgtggctgagacacggtgtgataaa |
13114481 |
T |
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| Q |
312 |
acgctgagggaatggttggatgaaaatgagtattcagttgatgaacttgttcatgatcatgtgcttggtcctgatcttgctttttctcc |
400 |
Q |
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| T |
13114482 |
acgctgcatgaatggtttgatgaaaaagaatacagtgttgaaggatttgtcccagatcatgtgcttggtcctgatcttgctttttctcc |
13114570 |
T |
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