View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_low_4 (Length: 682)

Name: NF19382_low_4
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_low_4
NF19382_low_4
[»] chr1 (13 HSPs)
chr1 (1-411)||(51059270-51059686)
chr1 (416-609)||(422170-422364)
chr1 (417-609)||(28012889-28013083)
chr1 (512-609)||(7842356-7842453)
chr1 (518-574)||(15964322-15964378)
chr1 (565-609)||(17695267-17695310)
chr1 (515-575)||(16135544-16135604)
chr1 (621-660)||(7842334-7842372)
chr1 (515-574)||(13876686-13876745)
chr1 (621-660)||(28012867-28012905)
chr1 (417-458)||(7843124-7843165)
chr1 (621-649)||(422158-422186)
chr1 (493-561)||(5500589-5500657)
[»] chr8 (8 HSPs)
chr8 (413-609)||(1872577-1872773)
chr8 (517-574)||(34685997-34686054)
chr8 (518-574)||(7290941-7290997)
chr8 (515-571)||(28220800-28220856)
chr8 (515-574)||(3038627-3038686)
chr8 (515-574)||(18756434-18756493)
chr8 (512-571)||(23176551-23176610)
chr8 (525-574)||(6267282-6267331)
[»] chr6 (8 HSPs)
chr6 (412-609)||(4487719-4487911)
chr6 (417-605)||(25441684-25441867)
chr6 (529-609)||(26819695-26819776)
chr6 (562-609)||(18309160-18309206)
chr6 (484-576)||(18306616-18306709)
chr6 (511-571)||(11083918-11083978)
chr6 (621-667)||(26819760-26819806)
chr6 (525-574)||(34994053-34994102)
[»] chr3 (23 HSPs)
chr3 (410-609)||(48154348-48154542)
chr3 (414-609)||(5125407-5125602)
chr3 (419-609)||(29923035-29923226)
chr3 (419-609)||(29972188-29972379)
chr3 (413-609)||(11019665-11019861)
chr3 (414-609)||(54607839-54608028)
chr3 (413-580)||(36689668-36689832)
chr3 (413-607)||(42663986-42664180)
chr3 (484-609)||(12121188-12121318)
chr3 (545-608)||(47871176-47871239)
chr3 (512-600)||(4556944-4557032)
chr3 (4-82)||(34618080-34618158)
chr3 (515-574)||(19606681-19606740)
chr3 (515-574)||(32180518-32180577)
chr3 (515-574)||(47930434-47930493)
chr3 (512-574)||(26000754-26000816)
chr3 (520-574)||(40640403-40640457)
chr3 (621-661)||(5125384-5125423)
chr3 (515-571)||(45879254-45879310)
chr3 (621-661)||(54607816-54607855)
chr3 (542-605)||(435201-435263)
chr3 (525-574)||(38392405-38392454)
chr3 (581-609)||(43486221-43486249)
[»] chr7 (13 HSPs)
chr7 (412-609)||(25470614-25470806)
chr7 (412-609)||(8759424-8759621)
chr7 (515-574)||(22955079-22955138)
chr7 (515-574)||(49002446-49002505)
chr7 (493-574)||(4618499-4618581)
chr7 (518-571)||(5781740-5781793)
chr7 (621-661)||(8759401-8759440)
chr7 (518-574)||(40382111-40382167)
chr7 (407-458)||(4902659-4902710)
chr7 (515-574)||(10675026-10675085)
chr7 (512-574)||(7743152-7743214)
chr7 (518-574)||(4902542-4902598)
chr7 (515-574)||(37854062-37854122)
[»] chr5 (19 HSPs)
chr5 (417-609)||(8762864-8763051)
chr5 (417-609)||(13888300-13888487)
chr5 (420-609)||(26412017-26412207)
chr5 (469-565)||(3014672-3014769)
chr5 (515-607)||(10053787-10053881)
chr5 (472-609)||(33848070-33848208)
chr5 (529-609)||(33752489-33752569)
chr5 (474-577)||(12080459-12080563)
chr5 (493-605)||(12164054-12164171)
chr5 (515-574)||(22616715-22616774)
chr5 (484-587)||(13381110-13381214)
chr5 (515-574)||(27579248-27579307)
chr5 (515-574)||(33163737-33163796)
chr5 (512-574)||(25654571-25654633)
chr5 (484-574)||(29766537-29766628)
chr5 (525-570)||(41417356-41417401)
chr5 (565-605)||(21269747-21269787)
chr5 (565-605)||(21271761-21271801)
chr5 (621-661)||(26411994-26412033)
[»] chr2 (22 HSPs)
chr2 (417-610)||(7565481-7565671)
chr2 (417-645)||(6356972-6357201)
chr2 (419-609)||(32652592-32652777)
chr2 (489-609)||(43445301-43445422)
chr2 (489-609)||(59360-59481)
chr2 (522-609)||(40912464-40912545)
chr2 (515-609)||(27355155-27355249)
chr2 (515-609)||(45411920-45412014)
chr2 (515-572)||(15651072-15651129)
chr2 (518-574)||(18947380-18947436)
chr2 (515-574)||(17244837-17244896)
chr2 (516-574)||(19093676-19093734)
chr2 (471-568)||(41644101-41644199)
chr2 (518-574)||(19073574-19073630)
chr2 (515-571)||(41713386-41713442)
chr2 (621-661)||(43445406-43445445)
chr2 (515-566)||(38249905-38249956)
chr2 (512-571)||(42005611-42005670)
chr2 (621-667)||(59331-59376)
chr2 (512-574)||(27138785-27138847)
chr2 (517-574)||(18059131-18059188)
chr2 (515-571)||(34441647-34441703)
[»] chr4 (13 HSPs)
chr4 (417-645)||(14246343-14246572)
chr4 (417-609)||(5914938-5915125)
chr4 (489-609)||(5813434-5813554)
chr4 (562-609)||(22722042-22722089)
chr4 (518-595)||(28292430-28292507)
chr4 (542-603)||(47237449-47237510)
chr4 (517-570)||(54995015-54995068)
chr4 (515-574)||(9743812-9743871)
chr4 (515-571)||(17612559-17612615)
chr4 (621-661)||(22722073-22722112)
chr4 (515-574)||(2570700-2570759)
chr4 (489-574)||(2266597-2266682)
chr4 (621-650)||(5813421-5813450)
[»] scaffold0312 (2 HSPs)
scaffold0312 (416-609)||(8208-8402)
scaffold0312 (621-649)||(8386-8414)
[»] scaffold0262 (1 HSPs)
scaffold0262 (518-609)||(11443-11534)
[»] scaffold0001 (1 HSPs)
scaffold0001 (515-605)||(65961-66051)
[»] scaffold0003 (1 HSPs)
scaffold0003 (542-609)||(107914-107981)
[»] scaffold0050 (1 HSPs)
scaffold0050 (515-574)||(5811-5870)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 51059686 - 51059270
Alignment:
Q  1 catatgtttgtggatgactagtaataataaggtgttccaaaactctactatgattgtttaagcttcgattatgaagataaatcaccaaagggttgtctgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  51059686 catatgtttgtggatgactagtaataataaggtgttccaaaactctactatgattgtttaagcttcaattatgtagataaatcaccaaagggttgtctgt 51059587  T
Q  101 tttttcccgtctcttctggtagtaacgcttctttgtccatatcttggacccctc------gtggttgcttgaagcttagtggggtgaggatggtgcaatg 194  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  51059586 tttttcccgtctcttctggtagtaacgcttctttgtccatctcttggacccctgtgactagtggttgcttgaagcttagtggggtgaggatggtgcaatg 51059487  T
Q  195 agactacaacaagttgtgaggttgtagctcatgaccataatcagaannnnnnnggtgttaacctttcggtttttaagggtatgcatgagtcgtggtaatc 294  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  51059486 agactacaacaagttgtggggttgtagctcgtgaccataatcagaattttttttgtgttaacctttcggtttttaagggtatgcatgagtcgtggtaatc 51059387  T
Q  295 cagagttcatccaagaatcgtttcatccaaatgatttgaaggtggccgtgtgatttgtgttaagataggtgttgtgcaagatatccttatttactgctgg 394  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51059386 tagagttcatccaagaatcgtttcatccaaatgatttaaaggtggccgtgtgatttgtgttaagataggtgttgtgcaagatatccttatttactgctgg 51059287  T
Q  395 tttttatgattcttaat 411  Q
    |||||||||||||||||    
T  51059286 tttttatgattcttaat 51059270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 416 - 609
Target Start/End: Complemental strand, 422364 - 422170
Alignment:
Q  416 ggcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgttttgt-ga 514  Q
    |||||||||||||| ||||| ||||| |||||||| |||||||||        ||||||||||||||| ||| ||  ||||||||||||||| |||| ||    
T  422364 ggcttctatggtgttgtcaagaaaatgacttttttgaaaaagtcattttatttaaccaataacatagtagttgatatcatgtcagctaatgtcttgttga 422265  T
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    ||||||||| ||  |||||| |||| |||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  422264 tggaccactctacgactaaactttactttattacaacttagtcctcatacaaaatattaattacttttgatttattaacttattttatttaaaat 422170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 417 - 609
Target Start/End: Complemental strand, 28013083 - 28012889
Alignment:
Q  417 gcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgttttg-tgat 515  Q
    ||||||||||||||||||| |||||  ||||||| ||||||| |        | |||||| |||| ||||| ||| ||||||||||| ||| ||| ||||    
T  28013083 gcttctatggtgtagtcaagaaaatgtcttttttgaaaaagttattttggttagccaatagcataattgttgatgtcatgtcagctagtgtcttgctgat 28012984  T
Q  516 ggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattactttt-gatttattaacttattttatttaaaat 609  Q
     |||||  | || | |||| ||||  ||||||||||||||||||  || ||| |||||||||||||| |||||||||||||||||||||||||||    
T  28012983 agaccatcgcaagagtaaactttaccttattacaaatcagtcctcgtaaaaactattaattactttttgatttattaacttattttatttaaaat 28012889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 512 - 609
Target Start/End: Complemental strand, 7842453 - 7842356
Alignment:
Q  512 tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    |||| ||||||||||| | |||| ||||  ||||||||||||| ||||  || |||||||| ||||||||||||||||||||||||||||||||||||    
T  7842453 tgatagaccactgtaagaataaactttatcttattacaaatcaatcctcgtaaaaaatatttattacttttgatttattaacttattttatttaaaat 7842356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 574
Target Start/End: Complemental strand, 15964378 - 15964322
Alignment:
Q  518 accactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||||| |||||||||||||||  |||||||||||||||||| ||| ||||||||||    
T  15964378 accactctaaaactaaattttaccttattacaaatcagtcctcatataaaatattaa 15964322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 609
Target Start/End: Original strand, 17695267 - 17695310
Alignment:
Q  565 aaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  17695267 aaaatattaatta-ttttgatttattaacttattttatttaaaat 17695310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 575
Target Start/End: Complemental strand, 16135604 - 16135544
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaat 575  Q
    ||||||||| |||||||||| ||||   |||||||||||||| || |||||||||||||||    
T  16135604 tggaccactctaaaactaaactttaccctattacaaatcagttctcatacaaaatattaat 16135544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 621 - 660
Target Start/End: Complemental strand, 7842372 - 7842334
Alignment:
Q  621 cttattttatttaaaataaaatcattttttgttcttcatc 660  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  7842372 cttattttatttaaaataaaatcat-ttttgttcttcatc 7842334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 574
Target Start/End: Original strand, 13876686 - 13876745
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||| |||||||||| ||||  |||||||||||| || || ||||||||||||||    
T  13876686 tggaccactctaaaactaaactttaccttattacaaatcggtactcatacaaaatattaa 13876745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 621 - 660
Target Start/End: Complemental strand, 28012905 - 28012867
Alignment:
Q  621 cttattttatttaaaataaaatcattttttgttcttcatc 660  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  28012905 cttattttatttaaaataaaatcat-ttttgttcttcatc 28012867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 458
Target Start/End: Complemental strand, 7843165 - 7843124
Alignment:
Q  417 gcttctatggtgtagtcaaaaaaataacttttttaaaaaagt 458  Q
    ||||||||||||||||||| ||||| |||||||| |||||||    
T  7843165 gcttctatggtgtagtcaagaaaatgactttttttaaaaagt 7843124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 621 - 649
Target Start/End: Complemental strand, 422186 - 422158
Alignment:
Q  621 cttattttatttaaaataaaatcattttt 649  Q
    |||||||||||||||||||||||||||||    
T  422186 cttattttatttaaaataaaatcattttt 422158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 493 - 561
Target Start/End: Complemental strand, 5500657 - 5500589
Alignment:
Q  493 catgtcagctaatgttttgtgatggaccactgtaaaactaaattttaatttattacaaatcagtcctta 561  Q
    ||||||||||| |||| |||  |||| |||| |||||||||||||||  |||||| |||||| ||||||    
T  5500657 catgtcagctagtgttctgtcgtggatcactctaaaactaaattttaccttattataaatcactcctta 5500589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 413 - 609
Target Start/End: Original strand, 1872577 - 1872773
Alignment:
Q  413 gggggcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttg 511  Q
    |||| |||||||||||||||||| ||||| |||||||| |||||||||        | ||| ||||||||||||| ||||||||||||||||||| ||||    
T  1872577 ggggacttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttgttcagccattaacatagttgttgatgccatgtcagctaatgtctttg 1872676  T
Q  512 tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    |||||||| | |||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1872677 tgatggac-attgtaaaaccaaattttactttattataaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 1872773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 574
Target Start/End: Complemental strand, 34686054 - 34685997
Alignment:
Q  517 gaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||| ||| |||||| |||| ||||||||||||||||||| ||||||||||||||    
T  34686054 gaccactctaagactaaactttactttattacaaatcagtcctcatacaaaatattaa 34685997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 574
Target Start/End: Complemental strand, 7290997 - 7290941
Alignment:
Q  518 accactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||||| |||||||||| ||||  ||||||||||||| |||| ||||||||||||||    
T  7290997 accactctaaaactaaactttatcttattacaaatcaatcctcatacaaaatattaa 7290941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 571
Target Start/End: Original strand, 28220800 - 28220856
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatat 571  Q
    ||||||||| |||||||||  ||||  |||||||||||||||||| |||||||||||    
T  28220800 tggaccactctaaaactaagctttatcttattacaaatcagtcctcatacaaaatat 28220856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 574
Target Start/End: Complemental strand, 3038686 - 3038627
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||| |||||||||| ||||  ||||||||||||| || | ||||||||||||||    
T  3038686 tggaccactctaaaactaaactttaccttattacaaatcaatcatcatacaaaatattaa 3038627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 574
Target Start/End: Original strand, 18756434 - 18756493
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||| |||||||||  ||||  |||||||||||| ||||| ||||||||||||||    
T  18756434 tggaccactctaaaactaatctttaccttattacaaatctgtcctcatacaaaatattaa 18756493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 571
Target Start/End: Original strand, 23176551 - 23176610
Alignment:
Q  512 tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatat 571  Q
    |||||||||||| |||||||||  ||||  ||||||||||| |||||| |||||||||||    
T  23176551 tgatggaccactctaaaactaagctttatcttattacaaattagtcctcatacaaaatat 23176610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 574
Target Start/End: Original strand, 6267282 - 6267331
Alignment:
Q  525 taaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||||||||| ||||  |||||||||||||||| | ||||||||||||||    
T  6267282 taaaactaaactttatcttattacaaatcagtcatcatacaaaatattaa 6267331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 2e-51; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 412 - 609
Target Start/End: Original strand, 4487719 - 4487911
Alignment:
Q  412 tgggggcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-ttt 510  Q
    |||| |||||||||||| ||| |||||||| ||||||||||||||||||        |||||||| |||||||||||||||||||||||||| ||| |||    
T  4487719 tgggagcttctatggtgcagttaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtcttt 4487818  T
Q  511 gtgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||| |||||      |||||||||||||||||||||||||||||    
T  4487819 gtgatggaccactgtaacactaaattttactttattacaaatcagtcctcatacaaaacattaa------ttgatttattaacttattttatttaaaat 4487911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 417 - 605
Target Start/End: Complemental strand, 25441867 - 25441684
Alignment:
Q  417 gcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttgtgat 515  Q
    |||||||||||| |||||||||||| ||||||||||||||||||        |||||||| |||||||||||||| ||||| ||||| ||| ||||||||    
T  25441867 gcttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgtcatgttagctagtgtctttgtgat 25441768  T
Q  516 ggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttattta 605  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||      |||||||||||||||||||||||||    
T  25441767 ggaccactgtaacactaaattttactttatcacaaatcagtcctcatacaaaatattaa------ttgatttattaacttattttattta 25441684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 529 - 609
Target Start/End: Original strand, 26819695 - 26819776
Alignment:
Q  529 actaaattttaattt-attacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    ||||||||||| ||| ||||||||| || | || |||||||||||||||||||||||||||| |||||||||||||||||||    
T  26819695 actaaattttacttttattacaaataagccattgtacaaaatattaattacttttgatttataaacttattttatttaaaat 26819776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 562 - 609
Target Start/End: Original strand, 18309160 - 18309206
Alignment:
Q  562 tacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18309160 tacaaaatattaattacttttgatttattaactta-tttatttaaaat 18309206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 576
Target Start/End: Original strand, 18306616 - 18306709
Alignment:
Q  484 tgttcatgccatgtcagctaatgttttg-tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaatt 576  Q
    |||| ||||||||||||||| ||| ||| |||||||||||||| | |  ||||||||  ||||||||||||| ||||  |||||||||||||||    
T  18306616 tgttgatgccatgtcagctagtgtcttgctgatggaccactgttagatcaaattttaccttattacaaatcaatcctcgtacaaaatattaatt 18306709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 511 - 571
Target Start/End: Original strand, 11083918 - 11083978
Alignment:
Q  511 gtgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatat 571  Q
    ||||| ||||||| |||||||||  ||||  ||||||||||||||||||||||||||||||    
T  11083918 gtgatagaccactctaaaactaagctttatcttattacaaatcagtccttatacaaaatat 11083978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 26819760 - 26819806
Alignment:
Q  621 cttattttatttaaaataaaatcattttttgttcttcatctttttat 667  Q
    |||||||||||||||||||||| ||| |||||| ||||||| |||||    
T  26819760 cttattttatttaaaataaaataattatttgttattcatctgtttat 26819806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 574
Target Start/End: Complemental strand, 34994102 - 34994053
Alignment:
Q  525 taaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||||||||||| ||  ||||||||||||||| |||||| ||||||||||    
T  34994102 taaaactaaattgtatcttattacaaatcagttcttatataaaatattaa 34994053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 3e-50; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 410 - 609
Target Start/End: Original strand, 48154348 - 48154542
Alignment:
Q  410 attgggggcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-t 508  Q
    |||||| |||||||||||| ||| |||||||| |||||||||||||| |||        |||||||| |||||||||||||||||||||||||| ||| |    
T  48154348 attgggagcttctatggtgcagttaaaaaaatgacttttttaaaaaaatcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtct 48154447  T
Q  509 ttgtgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaa 608  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||| |||||      ||||||||||||||||||||||||||||    
T  48154448 ttgtgatggaccactgtaacactaaattttactttattacaaatcagtcctcatacaaaacattaa------ttgatttattaacttattttatttaaaa 48154541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 414 - 609
Target Start/End: Complemental strand, 5125602 - 5125407
Alignment:
Q  414 ggggcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttgt 512  Q
    |||| ||||||||||||||||| ||||| |||||||| ||||||| |        ||||||||||||| ||||| ||||||||||||||| ||| |||||    
T  5125602 ggggtttctatggtgtagtcaagaaaatgacttttttgaaaaagttattttatttaaccaataacataattgttaatgccatgtcagctagtgtctttgt 5125503  T
Q  513 gatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    ||||||||||||||| ||||||| | |  ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5125502 gatggaccactgtaagactaaatat-atcttattacaaatcagtcctcttacaaaatattaattacttttgatttattaacttattttatttaaaat 5125407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 419 - 609
Target Start/End: Original strand, 29923035 - 29923226
Alignment:
Q  419 ttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttgtgatgg 517  Q
    ||||||||||||||||| ||||| |||||||| |||||||||        ||| ||||  |||||| || |||||||||||||| | || ||||||||||    
T  29923035 ttctatggtgtagtcaagaaaatgactttttttaaaaagtcattttatttaactaatagtatagttcttgatgccatgtcagctgacgtctttgtgatgg 29923134  T
Q  518 accactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    |||||| ||||||||||||||| |||||||||||| ||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||    
T  29923135 accactataaaactaaattttactttattacaaataagttcttgtacaaaatattaataacctttgatttattaacttattttatttaaaat 29923226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 419 - 609
Target Start/End: Original strand, 29972188 - 29972379
Alignment:
Q  419 ttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttgtgatgg 517  Q
    ||||||||||||||||| ||||| |||||||| |||||||||        ||| ||||  |||||| || |||||||||||||| | || ||||||||||    
T  29972188 ttctatggtgtagtcaagaaaatgactttttttaaaaagtcattttatttaactaatagtatagttcttgatgccatgtcagctgacgtctttgtgatgg 29972287  T
Q  518 accactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    |||||| ||||||||||||||| |||||||||||| ||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||    
T  29972288 accactataaaactaaattttactttattacaaataagttcttgtacaaaatattaataacctttgatttattaacttattttatttaaaat 29972379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 413 - 609
Target Start/End: Complemental strand, 11019861 - 11019665
Alignment:
Q  413 gggggcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttg 511  Q
    ||||||||||||||||||||||||||||| | |||||| |||||||||        | |||||| |||  ||||| |||  |||| ||||| ||| ||||    
T  11019861 gggggcttctatggtgtagtcaaaaaaatgatttttttgaaaaagtcattttatttagccaatagcatgattgtt-atgtaatgttagctagtgtctttg 11019763  T
Q  512 tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    |||||||||||| ||| |||||||||||  ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||| |||||||||    
T  11019762 tgatggaccactctaagactaaattttatcttattacaaatcagtcctcgtataaaatattaattacttttgatttattaacttatttaatttaaaat 11019665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 414 - 609
Target Start/End: Complemental strand, 54608028 - 54607839
Alignment:
Q  414 ggggcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttgt 512  Q
    ||||||||||||||||||| || ||||| |||||||| |||||||||        | ||||||||||| ||||| |||||||||       ||| |||||    
T  54608028 ggggcttctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgccatgtg------tgtctttgt 54607935  T
Q  513 gatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    ||||||||||||||| ||||||| | |  |||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54607934 gatggaccactgtaagactaaatat-atcttattacaaatcagtcttcttacaaaatattaattacttttgatttattaacttattttatttaaaat 54607839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 413 - 580
Target Start/End: Complemental strand, 36689832 - 36689668
Alignment:
Q  413 gggggcttctatggtgtagtcaaaaaaataactttttta-aaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgttttg 511  Q
    ||||||||||||||||| ||||| ||||| ||||||||  |||||||||        ||||||||||||||||||| ||| ||||||||||| ||| |||    
T  36689832 gggggcttctatggtgttgtcaagaaaatgactttttttgaaaaagtcattt-----aaccaataacatagttgttgatgtcatgtcagctagtgtcttg 36689738  T
Q  512 t-gatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattactt 580  Q
    | |||||||||| ||||||||||| |||| |||||||||||| |||||| ||||||||||||||||||||    
T  36689737 ttgatggaccaccgtaaaactaaactttactttattacaaataagtcctcatacaaaatattaattactt 36689668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 413 - 607
Target Start/End: Original strand, 42663986 - 42664180
Alignment:
Q  413 gggggcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttg 511  Q
    ||||||||||||||||||||||| ||||| |||||||  ||||||| |        |  |||||  ||||||||| ||| ||||||||||| ||| ||||    
T  42663986 gggggcttctatggtgtagtcaagaaaatgactttttagaaaaagttattttatttagtcaatagtatagttgttgatgtcatgtcagctagtgtctttg 42664085  T
Q  512 tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaa 607  Q
    ||||  |||||||||| ||||||||||| |||||||||||||||||||  ||||||| |||| |||||||||||||||||||| ||| ||||||||    
T  42664086 tgataaaccactgtaagactaaattttactttattacaaatcagtcctcgtacaaaa-attatttacttttgatttattaactgattgtatttaaa 42664180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 484 - 609
Target Start/End: Original strand, 12121188 - 12121318
Alignment:
Q  484 tgttcatgccatgtcagctaatgttttg-tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattactttt 582  Q
    |||| |||||||||||||||||||| || || || |||||| ||| |||||| ||||  ||||||||||| | |||||||||||||||||||||||||||    
T  12121188 tgttgatgccatgtcagctaatgttctgatggtgaaccactataagactaaactttaccttattacaaataactccttatacaaaatattaattactttt 12121287  T
Q  583 g----atttattaacttattttatttaaaat 609  Q
    |    ||||||||||||||| ||||||||||    
T  12121288 gatttatttattaacttattatatttaaaat 12121318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 545 - 608
Target Start/End: Complemental strand, 47871239 - 47871176
Alignment:
Q  545 ttacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaa 608  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47871239 ttacaaatcagtcctcatataaaatattaattacttttgatttattaacttattttatttaaaa 47871176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 512 - 600
Target Start/End: Complemental strand, 4557032 - 4556944
Alignment:
Q  512 tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttatttt 600  Q
    |||||||||| |||||  ||||| |||   |||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||    
T  4557032 tgatggaccattgtaagtctaaacttttccttattacaaatcagtccttataaaaaacaataattacttttgatttattaacttatttt 4556944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 34618080 - 34618158
Alignment:
Q  4 atgtttgtggatgactagtaataataaggtgttccaaaactctactatgattgtttaagcttcgattatgaagataaat 82  Q
    |||||||||| ||||||  ||| ||| ||||||||| || |||| |||||||||||||||||||||| |||||||||||    
T  34618080 atgtttgtggctgactaacaatgatagggtgttccagaattctagtatgattgtttaagcttcgattgtgaagataaat 34618158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 574
Target Start/End: Original strand, 19606681 - 19606740
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||| |||||||||| ||||  |||||||||||||||||| ||||||||||||||    
T  19606681 tggaccactctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 19606740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 574
Target Start/End: Original strand, 32180518 - 32180577
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||| |||||||||| ||||  |||||||||||||||||| ||||||||||||||    
T  32180518 tggaccactctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 32180577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 574
Target Start/End: Original strand, 47930434 - 47930493
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||| |||||||||  |||| ||||||||||||||||| ||||||||||||||||    
T  47930434 tggaccactctaaaactaagctttactttattacaaatcagtcattatacaaaatattaa 47930493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 512 - 574
Target Start/End: Complemental strand, 26000816 - 26000754
Alignment:
Q  512 tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||| ||||||| |||||||||| |||| |||||||||||||||| || ||||||||||||||    
T  26000816 tgatagaccactctaaaactaaactttactttattacaaatcagtactcatacaaaatattaa 26000754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 520 - 574
Target Start/End: Original strand, 40640403 - 40640457
Alignment:
Q  520 cactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||| |||||||||| |||| ||||||||||||||||||| ||||||||||||||    
T  40640403 cactctaaaactaaactttattttattacaaatcagtcctcatacaaaatattaa 40640457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 661
Target Start/End: Complemental strand, 5125423 - 5125384
Alignment:
Q  621 cttattttatttaaaataaaatcattttttgttcttcatct 661  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  5125423 cttattttatttaaaataaaatcat-ttttgttcttcatct 5125384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 571
Target Start/End: Original strand, 45879254 - 45879310
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatat 571  Q
    ||||||||| |||| ||||| ||||  |||||||||||||||||| |||||||||||    
T  45879254 tggaccactttaaagctaaactttaccttattacaaatcagtcctcatacaaaatat 45879310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 661
Target Start/End: Complemental strand, 54607855 - 54607816
Alignment:
Q  621 cttattttatttaaaataaaatcattttttgttcttcatct 661  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  54607855 cttattttatttaaaataaaatcat-ttttgttcttcatct 54607816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 605
Target Start/End: Complemental strand, 435263 - 435201
Alignment:
Q  542 ttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttattta 605  Q
    ||||||||||| ||||||  || ||||  ||||||||||| |||||||||||||||||||||||    
T  435263 ttattacaaattagtcctcgtagaaaactttaattacttt-gatttattaacttattttattta 435201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 574
Target Start/End: Original strand, 38392405 - 38392454
Alignment:
Q  525 taaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||||||||||||||  |||||||||||||||| |  |||||||||||||    
T  38392405 taaaactaaattttacattattacaaatcagtcatcttacaaaatattaa 38392454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 581 - 609
Target Start/End: Complemental strand, 43486249 - 43486221
Alignment:
Q  581 ttgatttattaacttattttatttaaaat 609  Q
    |||||||||||||||||||||||||||||    
T  43486249 ttgatttattaacttattttatttaaaat 43486221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 412 - 609
Target Start/End: Complemental strand, 25470806 - 25470614
Alignment:
Q  412 tgggggcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-ttt 510  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||||||        |||||||| |||||||||||||||||||||||| | ||| |||    
T  25470806 tgggagcttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtcttt 25470707  T
Q  511 gtgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    |||||||||||| |||| ||||||||||| |||||||||||||||||||  |||||||||||||      |||||||||||||||||||||||||||||    
T  25470706 gtgatggaccaccgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 25470614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 412 - 609
Target Start/End: Complemental strand, 8759621 - 8759424
Alignment:
Q  412 tgggggcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-ttt 510  Q
    |||||||||||||||||||| ||| ||||| |||||||| |||||||||        | ||||||||||| ||||| ||| ||||||||||| ||| |||    
T  8759621 tgggggcttctatggtgtagccaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtcttt 8759522  T
Q  511 gtgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
     |||||||||||||||| | ||||| | |  ||| |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8759521 ttgatggaccactgtaagattaaatat-atcttagtacaaatcggtcctcttacaaaatattaattacttttgatttattaacttattttatttaaaat 8759424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 515 - 574
Target Start/End: Original strand, 22955079 - 22955138
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||| |||||||||| ||||  ||||||||||||||| || ||||||||||||||    
T  22955079 tggaccactctaaaactaaactttaccttattacaaatcagttctcatacaaaatattaa 22955138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 515 - 574
Target Start/End: Complemental strand, 49002505 - 49002446
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||| |||||||||| ||||  | |||||||||||||||| ||||||||||||||    
T  49002505 tggaccactctaaaactaaactttacctcattacaaatcagtcctcatacaaaatattaa 49002446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 574
Target Start/End: Original strand, 4618499 - 4618581
Alignment:
Q  493 catgtcagctaatgttttg-tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||| |||||||||| || || ||||||||| |||||||||| ||||  ||| |||||||||||| | ||||||||||||||    
T  4618499 catgtgagctaatgttctgctggtggaccactctaaaactaaactttatcttactacaaatcagtcatcatacaaaatattaa 4618581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 571
Target Start/End: Complemental strand, 5781793 - 5781740
Alignment:
Q  518 accactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatat 571  Q
    |||||| ||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  5781793 accactttaaaactaagttttactttattacaaatcagtcatcatacaaaatat 5781740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 661
Target Start/End: Complemental strand, 8759440 - 8759401
Alignment:
Q  621 cttattttatttaaaataaaatcattttttgttcttcatct 661  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  8759440 cttattttatttaaaataaaatcat-ttttgttcttcatct 8759401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 574
Target Start/End: Complemental strand, 40382167 - 40382111
Alignment:
Q  518 accactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||||| |||||||||| ||||  |||||||||||||||||  ||||||||||||||    
T  40382167 accactctaaaactaaactttaccttattacaaatcagtccgcatacaaaatattaa 40382111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 458
Target Start/End: Complemental strand, 4902710 - 4902659
Alignment:
Q  407 ttaattgggggcttctatggtgtagtcaaaaaaataacttttttaaaaaagt 458  Q
    |||||||||||||||||||||| ||||| |||| | |||||||| |||||||    
T  4902710 ttaattgggggcttctatggtgaagtcagaaaattgacttttttgaaaaagt 4902659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 574
Target Start/End: Original strand, 10675026 - 10675085
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||| |||| ||| |||||| |||| |||||||||||| |||||| ||||||||||||||    
T  10675026 tggatcactctaagactaaactttactttattacaaattagtcctcatacaaaatattaa 10675085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 512 - 574
Target Start/End: Complemental strand, 7743214 - 7743152
Alignment:
Q  512 tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||||||||||| |||||||||| ||||  |||||||||| ||| ||| ||| ||||||||||    
T  7743214 tgatggaccactctaaaactaaactttaccttattacaaagcagccctcatataaaatattaa 7743152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 518 - 574
Target Start/End: Complemental strand, 4902598 - 4902542
Alignment:
Q  518 accactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||||| |||||||||| ||||  ||||||||||| ||| || ||||||||||||||    
T  4902598 accactctaaaactaaactttaccttattacaaattagtactcatacaaaatattaa 4902542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 515 - 574
Target Start/End: Original strand, 37854062 - 37854122
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaat-cagtccttatacaaaatattaa 574  Q
    ||||||||| ||||| |||| |||| |||||| ||||| ||||||| ||||||||||||||    
T  37854062 tggaccactctaaaattaaactttactttattccaaattcagtcctcatacaaaatattaa 37854122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 417 - 609
Target Start/End: Original strand, 8762864 - 8763051
Alignment:
Q  417 gcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttgtgat 515  Q
    |||||||||||| |||||||||||| ||||||||||||||||||        |||||||| |||||||||||||||||||||||| | ||| ||||||||    
T  8762864 gcttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtctttgtgat 8762963  T
Q  516 ggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    ||||||| |||| ||||||||||| |||||||||||||||||||  |||||||||||||      |||||||||||||||||||||||||||||    
T  8762964 ggaccaccgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 8763051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 417 - 609
Target Start/End: Complemental strand, 13888487 - 13888300
Alignment:
Q  417 gcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttgtgat 515  Q
    |||||||||||||||| |||||||| ||||||||||||||||||        |||||||  |||||||||| ||||||||||||||| ||| ||||||||    
T  13888487 gcttctatggtgtagtaaaaaaaatgacttttttaaaaaagtcattttatttaaccaattgcatagttgtttatgccatgtcagctagtgtctttgtgat 13888388  T
Q  516 ggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    ||||| |||||| ||||||||||| ||||||| ||||||||||| ||||||||||||||      |||||||||||||||||||||||||||||    
T  13888387 ggacccctgtaacactaaattttactttattataaatcagtcctcatacaaaatattaa------ttgatttattaacttattttatttaaaat 13888300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 420 - 609
Target Start/End: Complemental strand, 26412207 - 26412017
Alignment:
Q  420 tctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttgtgatgga 518  Q
    |||||||||||||||| ||||| |||| ||| |||||||||        | |||||| |||  ||||| ||| ||||||||||||| | |||||||||||    
T  26412207 tctatggtgtagtcaagaaaatgacttatttgaaaaagtcattttatttagccaatagcatgattgttgatgtcatgtcagctaatatctttgtgatgga 26412108  T
Q  519 ccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    ||| ||||| |||||||| ||  ||||| ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||    
T  26412107 ccattgtaagactaaattatatcttattgcaaatcagtcctcgtataaaatattaattacttttgatttattaacttattttatttaaaat 26412017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 565
Target Start/End: Complemental strand, 3014769 - 3014672
Alignment:
Q  469 aaccaataacatagttgttcatgccatgtcagctaatgt-tttgtgatggaccactgtaaaactaaattttaatttattacaaatcagtccttataca 565  Q
    |||||||| ||||||||||||||||||||||| || ||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||| |||||    
T  3014769 aaccaatagcatagttgttcatgccatgtcagttagtgtctttgtgatggaccactgtaacactaaattttactttattacaaatcaatcctcataca 3014672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 515 - 607
Target Start/End: Complemental strand, 10053881 - 10053787
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaa--tcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaa 607  Q
    ||||||||| ||  ||||||||||| |||||||||||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  10053881 tggaccactctacgactaaattttactttattacaaaaatcagtcctcatacaaaatattaattactcttgatttattaacttattttatttaaa 10053787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 472 - 609
Target Start/End: Original strand, 33848070 - 33848208
Alignment:
Q  472 caataacatagttgttcatgccatgtcagctaatgttttg-tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaata 570  Q
    |||||| ||| ||||| ||| ||||| ||||| |||  || |||| ||| ||| ||| |||||| ||||  |||||| |||||| |||| ||||||||||    
T  33848070 caataatataattgttaatgacatgtaagctagtgtcatgctgatagactactctaagactaaactttaccttattaaaaatcaatcctcatacaaaata 33848169  T
Q  571 ttaattacttttgatttattaacttattttatttaaaat 609  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  33848170 ttaattatttttgatttattaacttgttttatttaaaat 33848208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 529 - 609
Target Start/End: Original strand, 33752489 - 33752569
Alignment:
Q  529 actaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    |||||| ||||  |||||| |||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  33752489 actaaactttaccttattaaaaatcaatcctcatacaaaatattaattatttttgatttattaacttgttttatttaaaat 33752569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 474 - 577
Target Start/End: Original strand, 12080459 - 12080563
Alignment:
Q  474 ataacatagttgttcatgccatgtcagctaatgttttg-tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatatt 572  Q
    |||||||| ||||| ||| ||||||||||| |||  || || ||||||||| ||| |||||| ||||  |||||||||||||||||| ||||||||||||    
T  12080459 ataacataattgttgatgtcatgtcagctagtgtcctgctggtggaccactttaagactaaactttaccttattacaaatcagtcctcatacaaaatatt 12080558  T
Q  573 aatta 577  Q
     ||||    
T  12080559 tatta 12080563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 493 - 605
Target Start/End: Original strand, 12164054 - 12164171
Alignment:
Q  493 catgtcagctaatgttttgt-gatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaa----tattaattacttttgattt 587  Q
    ||||||||||| ||| |||| | ||||||| |||||| ||||| |||  ||||||||||||||||||| ||| ||||     ||||||||||||||||||    
T  12164054 catgtcagctagtgtattgttggtggaccattgtaaatctaaacttttttttattacaaatcagtcctcataaaaaacattaattaattacttttgattt 12164153  T
Q  588 attaacttattttattta 605  Q
    ||| |||||||| |||||    
T  12164154 atttacttatttaattta 12164171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 574
Target Start/End: Complemental strand, 22616774 - 22616715
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||| |||||||||| ||||  |||||||||||||||||| ||||||||||||||    
T  22616774 tggaccactctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 22616715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 587
Target Start/End: Complemental strand, 13381214 - 13381110
Alignment:
Q  484 tgttcatgccatgtcagctaatgttttg-tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattactttt 582  Q
    |||| ||| ||||||||||| |||| || || |||||| || |||  ||||| ||||  |||||| |||||| |||| ||||||||||||||||||||||    
T  13381214 tgttgatgtcatgtcagctagtgttctgctggtggacctctctaaggctaaactttaccttattataaatcaatcctcatacaaaatattaattactttt 13381115  T
Q  583 gattt 587  Q
    |||||    
T  13381114 gattt 13381110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 515 - 574
Target Start/End: Complemental strand, 27579307 - 27579248
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||| |||||||||| ||||  ||||||||||||| |||||| ||||||||||||    
T  27579307 tggaccactctaaaactaaactttaccttattacaaatcattccttaaacaaaatattaa 27579248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 515 - 574
Target Start/End: Complemental strand, 33163796 - 33163737
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||| |||||||||| ||||  |||||||||||||||| | ||||||||||||||    
T  33163796 tggaccactttaaaactaaactttaccttattacaaatcagtcttcatacaaaatattaa 33163737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 512 - 574
Target Start/End: Complemental strand, 25654633 - 25654571
Alignment:
Q  512 tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||||||||||| |||||||||| ||||  |||||||||||||||| || |||||| ||||||    
T  25654633 tgatggaccactctaaaactaaactttaccttattacaaatcagtctttgtacaaactattaa 25654571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 574
Target Start/End: Original strand, 29766537 - 29766628
Alignment:
Q  484 tgttcatgccatgtcagctaatgttttg-tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||| ||||||||||| ||| |||| |  |||||||||||| ||| |||||| ||||  ||||||||||| ||| || ||||||||||||||    
T  29766537 tgttaatgccatgtcaactagtgttctactgatggaccactctaagactaaactttaccttattacaaattagttctcatacaaaatattaa 29766628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 570
Target Start/End: Original strand, 41417356 - 41417401
Alignment:
Q  525 taaaactaaattttaatttattacaaatcagtccttatacaaaata 570  Q
    |||||||||||||||  |||||||||||||||| | ||||||||||    
T  41417356 taaaactaaattttaccttattacaaatcagtcatcatacaaaata 41417401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 565 - 605
Target Start/End: Complemental strand, 21269787 - 21269747
Alignment:
Q  565 aaaatattaattacttttgatttattaacttattttattta 605  Q
    |||| ||||||||||||| |||||||||||||||| |||||    
T  21269787 aaaacattaattacttttaatttattaacttatttaattta 21269747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 565 - 605
Target Start/End: Complemental strand, 21271801 - 21271761
Alignment:
Q  565 aaaatattaattacttttgatttattaacttattttattta 605  Q
    |||| ||||||||||||| |||||||||||||||| |||||    
T  21271801 aaaacattaattacttttaatttattaacttatttaattta 21271761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 621 - 661
Target Start/End: Complemental strand, 26412033 - 26411994
Alignment:
Q  621 cttattttatttaaaataaaatcattttttgttcttcatct 661  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  26412033 cttattttatttaaaataaattca-tttttgttcttcatct 26411994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 2e-48; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 417 - 610
Target Start/End: Complemental strand, 7565671 - 7565481
Alignment:
Q  417 gcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttgtgat 515  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||        |||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  7565671 gcttctacggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgat 7565572  T
Q  516 ggaccactgtaaaactaaattttaattt--attacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaatc 610  Q
    |||||||||||| ||||||||||| |||  |||||||||||||||| ||||||||||||||      ||||||||||||||||||||||||||||||    
T  7565571 ggaccactgtaacactaaattttattttttattacaaatcagtcctcatacaaaatattaa------ttgatttattaacttattttatttaaaatc 7565481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 417 - 645
Target Start/End: Complemental strand, 6357201 - 6356972
Alignment:
Q  417 gcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttgtgat 515  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||        | |||||| |||| || || |||||||||||||| |||| ||||||||    
T  6357201 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcatttaatttagccaatagcataattcttaatgccatgtcagctgatgtctttgtgat 6357102  T
Q  516 ggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaatcctnnn 615  Q
    |||||||| ||| ||||||||||| ||||||| |||| |||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||        
T  6357101 ggaccactataagactaaattttactttattataaataagtccttgaacaaaatattaattacttttgatttataaacttattttatttaaaatccctca 6357002  T
Q  616 nnnnncttattttatttaaaataaaatcat 645  Q
          ||||||||||||||||||||||||    
T  6357001 aaaaaattattttatttaaaataaaatcat 6356972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 419 - 609
Target Start/End: Complemental strand, 32652777 - 32652592
Alignment:
Q  419 ttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttgtgatgg 517  Q
    |||||||||| |||||||||||||||||||||||||||||||        |||||||| |||||||||||||||||||||||||| ||| |||||||| |    
T  32652777 ttctatggtgcagtcaaaaaaataacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatag 32652678  T
Q  518 accactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    |||||| | | | ||||||||| ||||||||||||||||||| ||||||||||||||      |||||||||||||||||||||||||||||    
T  32652677 accactatgacattaaattttactttattacaaatcagtcctcatacaaaatattaa------ttgatttattaacttattttatttaaaat 32652592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 489 - 609
Target Start/End: Original strand, 43445301 - 43445422
Alignment:
Q  489 atgccatgtcagctaatgttttgtg-atggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgattt 587  Q
    |||||||||||  |||||||||  | ||||||||| |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  43445301 atgccatgtcaattaatgtttttcggatggaccaccgtaagactaaattttactttattacaaattagtccttatacaaaatattaattacttttgattt 43445400  T
Q  588 attaacttattttatttaaaat 609  Q
    ||||||||||||||||||||||    
T  43445401 attaacttattttatttaaaat 43445422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 489 - 609
Target Start/End: Complemental strand, 59481 - 59360
Alignment:
Q  489 atgccatgtcagctaatgttttgt-gatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgattt 587  Q
    ||||||||||||||||||  || | |||||||||  |||| |||||||||||  |||||| ||||||||| |  ||||||||||||||||||||||||||    
T  59481 atgccatgtcagctaatggcttcttgatggaccaacgtaagactaaattttatcttattataaatcagtcatcgtacaaaatattaattacttttgattt 59382  T
Q  588 attaacttattttatttaaaat 609  Q
    ||||||||||||||||||||||    
T  59381 attaacttattttatttaaaat 59360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 522 - 609
Target Start/End: Original strand, 40912464 - 40912545
Alignment:
Q  522 ctgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||      |||||||||||||||||||||||||||||    
T  40912464 ctgtaacactaaattttactttattacaaatcagtcctcatacaaaatattaa------ttgatttattaacttattttatttaaaat 40912545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 515 - 609
Target Start/End: Complemental strand, 27355249 - 27355155
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    ||||||||| ||| |||||| ||| ||| | |||||||||||| | ||||||||||| || |||||||||||||||| |||||||| ||||||||    
T  27355249 tggaccactctaagactaaactttcattcactacaaatcagtcataatacaaaatatcaactacttttgatttattagcttattttgtttaaaat 27355155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 515 - 609
Target Start/End: Original strand, 45411920 - 45412014
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    ||||||||| ||| ||||||||||  || | |||||||||||| | ||||||||||| || |||||||||||||||| |||||||| ||||||||    
T  45411920 tggaccactctaagactaaattttccttcactacaaatcagtcataatacaaaatatcaactacttttgatttattagcttattttgtttaaaat 45412014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 515 - 572
Target Start/End: Complemental strand, 15651129 - 15651072
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatatt 572  Q
    ||||||||| ||||| |||| |||| ||||||||||||||||||| ||||||||||||    
T  15651129 tggaccactctaaaattaaactttactttattacaaatcagtcctcatacaaaatatt 15651072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 574
Target Start/End: Original strand, 18947380 - 18947436
Alignment:
Q  518 accactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||||| |||||||||| ||||  |||||||||||||||||| ||||||||||||||    
T  18947380 accactctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 18947436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 515 - 574
Target Start/End: Original strand, 17244837 - 17244896
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||| |||||||||| ||||  ||||||||||||| |||| ||||||||||||||    
T  17244837 tggaccactctaaaactaaactttaccttattacaaatcactcctcatacaaaatattaa 17244896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 574
Target Start/End: Complemental strand, 19093734 - 19093676
Alignment:
Q  516 ggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||||||| |||||||||| ||||  ||||||||||||||||||  |||||||||||||    
T  19093734 ggaccactctaaaactaaactttaccttattacaaatcagtcctcttacaaaatattaa 19093676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 471 - 568
Target Start/End: Complemental strand, 41644199 - 41644101
Alignment:
Q  471 ccaataacatagttgttcatgccatgtcagctaatgttttg-tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaa 568  Q
    ||||||| ||| ||||| ||| ||||||||||| |||  || || ||||||||| |||||||||| | ||  |||||||||||||||||| ||||||||    
T  41644199 ccaataatataattgttgatgtcatgtcagctagtgtcatgctggtggaccactctaaaactaaactctaccttattacaaatcagtcctcatacaaaa 41644101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 574
Target Start/End: Complemental strand, 19073630 - 19073574
Alignment:
Q  518 accactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||||| |||||||||||||||  ||||||||||||||||||  || ||||||||||    
T  19073630 accactttaaaactaaattttaccttattacaaatcagtcctcgtataaaatattaa 19073574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 571
Target Start/End: Complemental strand, 41713442 - 41713386
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatat 571  Q
    ||||||||| ||||||||| |||||  |||||||||||||||||| | |||||||||    
T  41713442 tggaccactctaaaactaagttttatcttattacaaatcagtcctcacacaaaatat 41713386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 661
Target Start/End: Original strand, 43445406 - 43445445
Alignment:
Q  621 cttattttatttaaaataaaatcattttttgttcttcatct 661  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43445406 cttattttatttaaaataaaatca-tttttgttcttcatct 43445445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 566
Target Start/End: Original strand, 38249905 - 38249956
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaa 566  Q
    ||||||||| |||||||||||||||  || ||||||||||||||| ||||||    
T  38249905 tggaccactctaaaactaaattttaccttgttacaaatcagtcctcatacaa 38249956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 571
Target Start/End: Complemental strand, 42005670 - 42005611
Alignment:
Q  512 tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatat 571  Q
    |||||||||||| ||||| ||| ||||| |||||||||||||||  || |||||||||||    
T  42005670 tgatggaccactttaaaattaagttttattttattacaaatcagctctcatacaaaatat 42005611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 621 - 667
Target Start/End: Complemental strand, 59376 - 59331
Alignment:
Q  621 cttattttatttaaaataaaatcattttttgttcttcatctttttat 667  Q
    ||||||||||||||||||||||||  ||||||||||||||| |||||    
T  59376 cttattttatttaaaataaaatca-attttgttcttcatctgtttat 59331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 512 - 574
Target Start/End: Original strand, 27138785 - 27138847
Alignment:
Q  512 tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||||||| ||| ||||| |||||||||  ||||||||||| |||||| || |||||||||||    
T  27138785 tgatggactactctaaaattaaattttaccttattacaaataagtcctcatgcaaaatattaa 27138847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 574
Target Start/End: Original strand, 18059131 - 18059188
Alignment:
Q  517 gaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||| |||||||||| ||||  || ||||||||||||| | ||||||||||||||    
T  18059131 gaccactctaaaactaaactttaccttgttacaaatcagtcatcatacaaaatattaa 18059188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 515 - 571
Target Start/End: Original strand, 34441647 - 34441703
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatat 571  Q
    |||| |||| |||||||||  ||||  |||||||||||||||||| |||||||||||    
T  34441647 tggatcactttaaaactaagctttatcttattacaaatcagtcctcatacaaaatat 34441703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 6e-48; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 417 - 645
Target Start/End: Complemental strand, 14246572 - 14246343
Alignment:
Q  417 gcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttgtgat 515  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||        | |||||| |||| || || |||||||||||||| |||| ||||||||    
T  14246572 gcttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgccatgtcagctgatgtctttgtgat 14246473  T
Q  516 ggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaatcctnnn 615  Q
    |||||||| ||| ||||||||||| |||||||||||| |||||||  ||||||||||||||| ||||||||||| |||||||||||||||||||||        
T  14246472 ggaccactataagactaaattttactttattacaaataagtccttgaacaaaatattaattatttttgatttataaacttattttatttaaaatccctca 14246373  T
Q  616 nnnnncttattttatttaaaataaaatcat 645  Q
          ||||||||||||||||||||||||    
T  14246372 aaaaaattattttatttaaaataaaatcat 14246343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 417 - 609
Target Start/End: Original strand, 5914938 - 5915125
Alignment:
Q  417 gcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgt-tttgtgat 515  Q
    |||||||||||| |||||||||||| ||||||||||||||||||        |||||||| || |||||||||| |||||||||||| ||| ||||||||    
T  5914938 gcttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcaaagttgttcataccatgtcagctagtgtctttgtgat 5915037  T
Q  516 ggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    |||||||||||| ||||||||||| |||||||||||| |||||| ||| ||||||||||      |||||||||||||||||||||||||||||    
T  5915038 ggaccactgtaacactaaattttactttattacaaattagtcctcataaaaaatattaa------ttgatttattaacttattttatttaaaat 5915125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 489 - 609
Target Start/End: Complemental strand, 5813554 - 5813434
Alignment:
Q  489 atgccatgtcagctaatgt-tttgtgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgattt 587  Q
    |||||||||||| || ||| ||| |||||||||||||||| ||||||||| | ||||||| |||| |||| || || |||||||||||||||||||||||    
T  5813554 atgccatgtcagttagtgtctttatgatggaccactgtaagactaaattt-actttattaaaaataagtcattgtataaaatattaattacttttgattt 5813456  T
Q  588 attaacttattttatttaaaat 609  Q
    ||||||||||||||||||||||    
T  5813455 attaacttattttatttaaaat 5813434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 562 - 609
Target Start/End: Original strand, 22722042 - 22722089
Alignment:
Q  562 tacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22722042 tacaaaatattgattacttttgatttattaacttattttatttaaaat 22722089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 518 - 595
Target Start/End: Original strand, 28292430 - 28292507
Alignment:
Q  518 accactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaactt 595  Q
    |||||| ||| |||||| ||||  ||||||||||||| |  | |||||||||||||||||||||||||||||||||||    
T  28292430 accactctaagactaaactttaccttattacaaatcaataatcatacaaaatattaattacttttgatttattaactt 28292507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 542 - 603
Target Start/End: Complemental strand, 47237510 - 47237449
Alignment:
Q  542 ttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatt 603  Q
    |||||||||||| ||||| ||| |||  ||||||||||||||||||||||||||||||||||    
T  47237510 ttattacaaatcggtcctcatagaaagcattaattacttttgatttattaacttattttatt 47237449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 570
Target Start/End: Original strand, 54995015 - 54995068
Alignment:
Q  517 gaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaata 570  Q
    ||||||| ||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  54995015 gaccactctaaaactaacttttactttattacaaatcagtcctcatacaaaata 54995068  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 515 - 574
Target Start/End: Complemental strand, 9743871 - 9743812
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    |||| |||| |||||||||||||||  |||||||||| ||||||| ||||||||||||||    
T  9743871 tggatcactctaaaactaaattttacattattacaaaccagtcctcatacaaaatattaa 9743812  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 571
Target Start/End: Complemental strand, 17612615 - 17612559
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatat 571  Q
    ||||||||| |||||||||||||||  ||||||||||| |||||| ||| |||||||    
T  17612615 tggaccactctaaaactaaattttaccttattacaaattagtcctcatagaaaatat 17612559  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 661
Target Start/End: Original strand, 22722073 - 22722112
Alignment:
Q  621 cttattttatttaaaataaaatcattttttgttcttcatct 661  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  22722073 cttattttatttaaaataaaatca-tttttgttcttcatct 22722112  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 574
Target Start/End: Complemental strand, 2570759 - 2570700
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||| |||||||||| ||||  ||||||||||||| |||| | ||||||||||||    
T  2570759 tggaccactctaaaactaaactttaccttattacaaatcattcctcaaacaaaatattaa 2570700  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 574
Target Start/End: Original strand, 2266597 - 2266682
Alignment:
Q  489 atgccatgtcagctaatgttttg-tgatggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||||||||| |||  || || |||||| || ||||| |||| ||||  |||||||||||||||||| ||||||||||||||    
T  2266597 atgccatgtcagctagtgtcctgctggtggacccctctaaaa-taaactttacattattacaaatcagtcctcatacaaaatattaa 2266682  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 621 - 650
Target Start/End: Complemental strand, 5813450 - 5813421
Alignment:
Q  621 cttattttatttaaaataaaatcatttttt 650  Q
    ||||||||||||||||||||||||||||||    
T  5813450 cttattttatttaaaataaaatcatttttt 5813421  T

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Target: scaffold0312 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 416 - 609
Target Start/End: Original strand, 8208 - 8402
Alignment:
Q  416 ggcttctatggtgtagtcaaaaaaataacttttttaaaaaagtcannnnnnnnaaccaataacatagttgttcatgccatgtcagctaatgttttgt-ga 514  Q
    |||||||||||||| ||||| ||||| |||||||| |||||||||        ||||||||||||||| ||| ||  ||||||||||||||| |||| ||    
T  8208 ggcttctatggtgttgtcaagaaaatgacttttttgaaaaagtcattttatttaaccaataacatagtagttgatatcatgtcagctaatgtcttgttga 8307  T
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    ||||||||| ||  |||||| |||| |||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8308 tggaccactctacgactaaactttactttattacaacttagtcctcatacaaaatattaattacttttgatttattaacttattttatttaaaat 8402  T

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Target: scaffold0312; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 621 - 649
Target Start/End: Original strand, 8386 - 8414
Alignment:
Q  621 cttattttatttaaaataaaatcattttt 649  Q
    |||||||||||||||||||||||||||||    
T  8386 cttattttatttaaaataaaatcattttt 8414  T

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Target: scaffold0262 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 518 - 609
Target Start/End: Original strand, 11443 - 11534
Alignment:
Q  518 accactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    |||||| ||| |||||||||||  |||||||||||||||||| |||||||||| ||||||||| | ||||||||||||||||| ||||||||    
T  11443 accactctaagactaaattttatcttattacaaatcagtcctcatacaaaataataattacttataatttattaacttattttgtttaaaat 11534  T

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Target: scaffold0001 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 515 - 605
Target Start/End: Complemental strand, 66051 - 65961
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttattta 605  Q
    ||||||||| ||| |||||| ||||  |||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  66051 tggaccactttaacactaaactttaccttattataaattagtcctcatacaaaatattaattacttttgatttattaacttatattattta 65961  T

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Target: scaffold0003 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 542 - 609
Target Start/End: Complemental strand, 107981 - 107914
Alignment:
Q  542 ttattacaaatcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 609  Q
    |||||||||||||||| | ||| |||| || |||||||||| ||||||||||||||||||||||||||    
T  107981 ttattacaaatcagtcttcatagaaaacataaattacttttaatttattaacttattttatttaaaat 107914  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 574
Target Start/End: Complemental strand, 5870 - 5811
Alignment:
Q  515 tggaccactgtaaaactaaattttaatttattacaaatcagtccttatacaaaatattaa 574  Q
    ||||||||| |||||||||| ||||  |||||| |||||||| || ||||||||||||||    
T  5870 tggaccactctaaaactaaactttaccttattataaatcagttctcatacaaaatattaa 5811  T

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