View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_low_40 (Length: 391)

Name: NF19382_low_40
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_low_40
NF19382_low_40
[»] chr2 (2 HSPs)
chr2 (1-216)||(26496788-26497006)
chr2 (211-379)||(26497142-26497310)
[»] chr4 (5 HSPs)
chr4 (3-77)||(12851243-12851317)
chr4 (9-76)||(12276577-12276644)
chr4 (214-257)||(12277317-12277360)
chr4 (211-260)||(17558113-17558162)
chr4 (211-260)||(52475793-52475842)
[»] chr1 (3 HSPs)
chr1 (211-260)||(24640657-24640706)
chr1 (211-251)||(26080358-26080398)
chr1 (15-79)||(43438700-43438764)
[»] chr8 (1 HSPs)
chr8 (99-185)||(9003362-9003448)
[»] chr5 (4 HSPs)
chr5 (211-260)||(23611668-23611717)
chr5 (211-260)||(23843064-23843113)
chr5 (12-79)||(8450107-8450174)
chr5 (151-187)||(3575573-3575609)
[»] scaffold0181 (1 HSPs)
scaffold0181 (211-260)||(3913-3962)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 26496788 - 26497006
Alignment:
Q  1 acaagaaatacccaacaggaacaagaacaaatagagcaactacagctgggttttggaaagcaacaggaagagacaaagccatatatcacaccaattccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26496788 acaagaaatacccaacaggaacaagaacaaatagagcaactacagctgggttttggaaagcaacaggaagagacaaagccatatatcacaccaattccaa 26496887  T
Q  101 aaggattggaatgaggaaaaccttagtcgtctacactggacgtgctcctcatggtcacaaaactgattggatcatgcatgagtatcgtct---tgatgat 197  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  26496888 aaggattggaatgaggaaaaccttagtgttctacactggacgtgctcctcatggtcacaaaactgattggatcatgcatgagtatcgtcttgatgatgat 26496987  T
Q  198 gataatgcagaagttcagg 216  Q
    |||||||||||||||||||    
T  26496988 gataatgcagaagttcagg 26497006  T

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Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 211 - 379
Target Start/End: Original strand, 26497142 - 26497310
Alignment:
Q  211 ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacacaaacagaagctaccaacaagaaattgaagaagaagatcatcacatgattaa 310  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26497142 ttcaggaagatggatgggtagtttgcagggtattcaaaaagaaaaacacaaacagaagctaccaacaagaaattgaagaagaagatcatcacatgattaa 26497241  T
Q  311 ccacatgagatcaacaaatggtccaaatcattttctagaaccaaaacatcatcatcacatgcaacaact 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26497242 ccacatgagatcaacaaatggtccaaatcattttctagaaccaaaacatcatcatcacatgcaacaact 26497310  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 12851243 - 12851317
Alignment:
Q  3 aagaaatacccaacaggaacaagaacaaatagagcaactacagctgggttttggaaagcaacaggaagagacaaa 77  Q
    ||||| || ||||| || ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  12851243 aagaagtatccaactggtacaagaacaaatagagcaactgcagctggattttggaaagcaacaggaagagacaaa 12851317  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 12276577 - 12276644
Alignment:
Q  9 tacccaacaggaacaagaacaaatagagcaactacagctgggttttggaaagcaacaggaagagacaa 76  Q
    |||||||||||  |||| || ||||||||||| |  || |||||||||||||||||||||||||||||    
T  12276577 tacccaacagggtcaaggactaatagagcaacaaatgcagggttttggaaagcaacaggaagagacaa 12276644  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 12277317 - 12277360
Alignment:
Q  214 aggaagatggatgggtagtatgcagggtattcaaaaagaaaaac 257  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||    
T  12277317 aggaagatggatgggtggtatgcagggtgttcaagaagaaaaac 12277360  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 17558113 - 17558162
Alignment:
Q  211 ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca 260  Q
    ||||| ||||||||||||||||| ||| |||||||||||||  |||||||    
T  17558113 ttcagaaagatggatgggtagtacgcatggtattcaaaaaggtaaacaca 17558162  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 52475793 - 52475842
Alignment:
Q  211 ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca 260  Q
    ||||| ||||||||||||||||| ||| |||||||||||||  |||||||    
T  52475793 ttcagaaagatggatgggtagtacgcatggtattcaaaaaggtaaacaca 52475842  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 24640706 - 24640657
Alignment:
Q  211 ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca 260  Q
    ||||| ||||||||||||||||| |||||||||||||||||| |||||||    
T  24640706 ttcagaaagatggatgggtagtacgcagggtattcaaaaagataaacaca 24640657  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 26080358 - 26080398
Alignment:
Q  211 ttcaggaagatggatgggtagtatgcagggtattcaaaaag 251  Q
    ||||| ||||||||||||||||| ||| |||||||||||||    
T  26080358 ttcagaaagatggatgggtagtacgcatggtattcaaaaag 26080398  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 43438700 - 43438764
Alignment:
Q  15 acaggaacaagaacaaatagagcaactacagctgggttttggaaagcaacaggaagagacaaagc 79  Q
    |||||||||||||| |||||||| ||| | ||||| || |||||||| || |||||||| |||||    
T  43438700 acaggaacaagaactaatagagccactgctgctggattctggaaagctactggaagagataaagc 43438764  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 9003362 - 9003448
Alignment:
Q  99 aaaaggattggaatgaggaaaaccttagtcgtctacactggacgtgctcctcatggtcacaaaactgattggatcatgcatgagtat 185  Q
    ||||||||||||||||| || ||  | ||  ||||||  || |||||||||||||| || ||| |||||||||||||||||||||||    
T  9003362 aaaaggattggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagtat 9003448  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 23611717 - 23611668
Alignment:
Q  211 ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca 260  Q
    ||||| ||||||||||||||||| ||| |||||||||||||| |||||||    
T  23611717 ttcagaaagatggatgggtagtacgcatggtattcaaaaagataaacaca 23611668  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 23843113 - 23843064
Alignment:
Q  211 ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca 260  Q
    ||||| ||||||||||||||||| ||| |||||||||||||| |||||||    
T  23843113 ttcagaaagatggatgggtagtacgcatggtattcaaaaagataaacaca 23843064  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 8450107 - 8450174
Alignment:
Q  12 ccaacaggaacaagaacaaatagagcaactacagctgggttttggaaagcaacaggaagagacaaagc 79  Q
    |||||||| |||||||| || ||||| || |  ||||||||||||||||| ||||||||||| |||||    
T  8450107 ccaacagggacaagaaccaacagagctaccatggctgggttttggaaagctacaggaagagataaagc 8450174  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 3575573 - 3575609
Alignment:
Q  151 atggtcacaaaactgattggatcatgcatgagtatcg 187  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  3575573 atggtcaaaaatctgattggatcatgcatgagtatcg 3575609  T

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Target: scaffold0181 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 3962 - 3913
Alignment:
Q  211 ttcaggaagatggatgggtagtatgcagggtattcaaaaagaaaaacaca 260  Q
    ||||| ||||||||||||||||| ||| |||||||||||||  |||||||    
T  3962 ttcagaaagatggatgggtagtacgcatggtattcaaaaaggtaaacaca 3913  T

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