View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19382_low_41 (Length: 391)
Name: NF19382_low_41
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 21242827 - 21242455
Alignment:
| Q |
1 |
gtacaaaagtgccgctgtatcggtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21242827 |
gtacaaaagtgccgctgtatcggtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagttt |
21242728 |
T |
|
| Q |
101 |
gaatatgaacccgttgcattacctattagatataaagtttgttatgtagagaatgatgagaacagctaactagtcaaactataactaaccaatctaacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21242727 |
gaatatgaacccgttgcattacctattagatataaagtttgttatgtagagaatgatgagaacagctaactagtcaaactataactaaccaatctaacta |
21242628 |
T |
|
| Q |
201 |
actttgtatataatattacccgaattgatgataattgctggaaagttgaaattgaaactcttcactttgctccataattcagggacagtgatgactagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21242627 |
actttgtatataatattacccgaattaatgataattgctggaaagttgaaattgaaactcttcactttgctccataattcagggacagtgatgactagtt |
21242528 |
T |
|
| Q |
301 |
taggattggaatccttgatttgtttggagagttctgcaacggtgtaaagaggatttgcagtggtgactattgc |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21242527 |
taggattggaatccttgatttgtttggagagttccgcaacggtgtaaagaggatttgcagtggtgactattgc |
21242455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 21258581 - 21258411
Alignment:
| Q |
23 |
gtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcattac |
122 |
Q |
| |
|
||||||||||| | | ||||||||| ||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||| | |||| |||||||||| |
|
|
| T |
21258581 |
gtctgtttcacgttgctttctggtatttctgttacttccccagctgattctatcaacgcctcaaaactcgtgaagttcgaatttcaacctgttgcattac |
21258482 |
T |
|
| Q |
123 |
ctattagatataaagtttgttatgtagagaatgatgagaacagctaactagtcaaactataactaaccaat |
193 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||||||||| ||||||||||||| |||||| |||| ||||| |
|
|
| T |
21258481 |
ctatcagatataaagtttgttatatagcgaatgatgagtacagctaactagtgtaactatcactatccaat |
21258411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 21254077 - 21253893
Alignment:
| Q |
11 |
gccgctgtatcggtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaac |
110 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
21254077 |
gccgctgtatcgctttgtttcacatcgttttctggtaattctgttacttctcatgctgtttcaatcaacgactcaaaactggtgaagtttgaatttgaac |
21253978 |
T |
|
| Q |
111 |
ccgttgc----attacctattagatataaagtttgt--tatgtagagaatgatgagaacagctaactagtcaaactataactaac |
189 |
Q |
| |
|
||||| | |||||||||||||| |||||||||| ||| || || ||||| |||||||||||||||| || |||||||||| |
|
|
| T |
21253977 |
ccgttacattaattacctattagatgtaaagtttgttatatataaagtatgataagaacagctaactagtttaattataactaac |
21253893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University