View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_44 (Length: 379)
Name: NF19382_low_44
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 371
Target Start/End: Complemental strand, 10168668 - 10168311
Alignment:
| Q |
14 |
aaattggaaaaaccattttcaaataaagccctccactatcaatattcttcttatccatatttctactagccctaattccttctctttttcgtgtgttttt |
113 |
Q |
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| T |
10168668 |
aaattggaaaaaccattttcaaataaagccctccactatcaatattcttcttatccatatttctactagccctaattccttctctttttcgtgtgttttt |
10168569 |
T |
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| Q |
114 |
gttgctcaaattcctctcttttaccttgttattttcttcaacatgatgttcctcaacaagatctttcaaagtaagttcataacttgattctggcatgttc |
213 |
Q |
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| T |
10168568 |
gttgctcaaattcctctcttttaccttgttattttcttcaacatgatgttcctcaacaagatctttcaaagtaagttcatagcttgattctggcatgttc |
10168469 |
T |
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| Q |
214 |
ttaaccatttccattaattctctttgacctctttcaatggcttgtgtctttgattcaggtgaaagacttctatagttgttgcttttactctttgttgtcc |
313 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10168468 |
ttaaccatttccattaactctctttgacctctttcaatggcttgtgtctttgattcaggtgaaagacttctatagttgttgcttttactctttgttgtcc |
10168369 |
T |
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| Q |
314 |
ataaaggtggagaacacataccagattcatcttcaacatgttgatcatgatgatgatg |
371 |
Q |
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| T |
10168368 |
ataaaggtggagaacacataccagattcatcttcaacatgttgatcatgatgatgatg |
10168311 |
T |
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