View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_45 (Length: 371)
Name: NF19382_low_45
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 34403086 - 34403306
Alignment:
| Q |
17 |
aaaattttcttctggggttccttcaattattattattatatatcctctttcaccaaaatggaaaatgcagatgaaagaggagagagaaagaagagaatgg |
116 |
Q |
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| T |
34403086 |
aaaattttcttctggggttccttcaattattattattatatatcctctttcaccaaaatggaaaatgcagatgaaagaggagagagaaagaagggaatgg |
34403185 |
T |
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| Q |
117 |
gatcacagcaatggagaatgaagctgtgaaaccaaatatacaaggaaggaagggatcataggaggacgagaatctccatgtccctgatttgtaataatca |
216 |
Q |
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| T |
34403186 |
gatcacagcaatggagaatgaagctgtgaaaccaaatatacaaggaaggaagggatcataggaggacgagaatctccatgtccctgttttgtaataatca |
34403285 |
T |
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| Q |
217 |
aaaaaattcctcaaagtttcc |
237 |
Q |
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| T |
34403286 |
aaaaaattcctcaaactttcc |
34403306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 325 - 363
Target Start/End: Original strand, 34403394 - 34403432
Alignment:
| Q |
325 |
aaggatccaatccaaaatgctgtcagcttatgatgatgt |
363 |
Q |
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| T |
34403394 |
aaggatccaatccaaaatgctgtcagcttatgatgatgt |
34403432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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