View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_46 (Length: 362)
Name: NF19382_low_46
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 33744249 - 33743940
Alignment:
| Q |
17 |
aatatcgctgacaaaaaatctaccgctcgtaaccgtcgcttcgatgacgattccattatccctaaaattgactgttacgttttcaatgagtcc--cggta |
114 |
Q |
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| T |
33744249 |
aatatcgctgacaaaaactccaccgctcgtaaccgtcgtttcgatgacgattccgttatccctaaaattgaccgttccgtttttaatgagagcgccggta |
33744150 |
T |
|
| Q |
115 |
gccggaaacaaacgtattttcgtctccgtctccagaaaccgaactcttctgctccagttcctgctcccgttgttcatgtttcttcgagttctcgcattgc |
214 |
Q |
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|||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
33744149 |
gccggaaacagacgtattctcgtcttcgtctccggaaaccgaactcttctgctccggttcctgctcccgttgttcctgtttcttccagttctcgcattgc |
33744050 |
T |
|
| Q |
215 |
ggatgatgaagagaagtcgaggattattcatcttcttcagggattattcagtgttgaagcaattcgtggcggcgaatgatgaccgtgctgttcctcttca |
314 |
Q |
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|||||||||||||| || |||||||| ||||||| ||||| ||||| |||||||||| |||||||||| ||||||||||||||||||||| ||||| |
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| T |
33744049 |
tgatgatgaagagaattcaaggattatcgatcttctccagggtttatttggtgttgaagcgcttcgtggcgg-gaatgatgaccgtgctgttccgcttca |
33743951 |
T |
|
| Q |
315 |
gattgaattca |
325 |
Q |
| |
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||||||||||| |
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| T |
33743950 |
gattgaattca |
33743940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 27903134 - 27903383
Alignment:
| Q |
17 |
aatatcgctgacaaaaaatctaccgctcgtaaccgtcgcttcgatgacgattccattatccctaaaattgactgttacgttttcaatgagtcccggtagc |
116 |
Q |
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| T |
27903134 |
aatatcgctgacaaaaactccacagcttgtaaccgttgcttcgatgacaattccgttatccctaaaattgaccgttccgtatacaatgagtgccggtagc |
27903233 |
T |
|
| Q |
117 |
cggaaacaaacgtattttcgtctccgtctccagaaaccgaactcttctgctccagttcctgctcccgttgttcatgtttcttcgagttctcgcattgcgg |
216 |
Q |
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|||||||| ||||||| ||||| |||||||| ||||||||||||||||||||| ||||| |||||||| ||||||||||||||| | |
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| T |
27903234 |
cggaaacagacgtattctcgtccccgtctccggaaaccgaactcttctgctccggttcc---------------tgtttcttggagttctcgcattgctg |
27903318 |
T |
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| Q |
217 |
atgatgaagagaagtcgaggattattcatcttcttcagggattattcagtgttgaagcaattcgt |
281 |
Q |
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| T |
27903319 |
atgatgaagagaattcgaggattattcatcttcttcagggattattcagtgttgaagcaattcgt |
27903383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 27903382 - 27903422
Alignment:
| Q |
304 |
gttcctcttcagattgaattcacgctgttagccgtccaaag |
344 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27903382 |
gttccgcttcagattgaattcacgctgttagccgtccaaag |
27903422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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