View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_54 (Length: 340)
Name: NF19382_low_54
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 85 - 321
Target Start/End: Complemental strand, 11369285 - 11369048
Alignment:
| Q |
85 |
taccctaaaggtaggtttaaagaataacattttt-aagacaaaatgatatcaaacatgattaattaaataatccaaaataactaagtcaaacttattata |
183 |
Q |
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| T |
11369285 |
taccctaaaggtaggtttaaagaataacatttttgaagacaaaatgatatcaaacatgattaattaaataatccaaaataactaagtcaaacttattata |
11369186 |
T |
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| Q |
184 |
tccagtgatataatgcctgcctagtaagtcaatcattcatcaaataagatagatagctcaagaacatgtgaatacgactatctaattttgttatctagtg |
283 |
Q |
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| T |
11369185 |
tccagtgatataatgcctgcctagtaagtcaatcattcatcaaataagatagatagctcaagaacatgtgaatacgactatctaattttgttatctagtg |
11369086 |
T |
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| Q |
284 |
gttagaaagagtggcagactgaaaaagaacatgtgaat |
321 |
Q |
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| T |
11369085 |
gttagaaagagtggcagactgaaaaagaacatgtgaat |
11369048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 11369061 - 11368997
Alignment:
| Q |
243 |
aagaacatgtgaatacgactatctaattttgttatctagtggttagaaagagtggcagactgaaa |
307 |
Q |
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| T |
11369061 |
aagaacatgtgaatacgactatctaattttgttatccagtggttaaaaagagtggcagactgaaa |
11368997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 11369355 - 11369323
Alignment:
| Q |
13 |
attcttcaaatcaatgtaaacaactcctgcaaa |
45 |
Q |
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| T |
11369355 |
attcttcaaatcaatgtaaacaactcctgcaaa |
11369323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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