View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_low_6 (Length: 652)

Name: NF19382_low_6
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_low_6
NF19382_low_6
[»] chr1 (1 HSPs)
chr1 (15-647)||(29144865-29145491)


Alignment Details
Target: chr1 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 15 - 647
Target Start/End: Original strand, 29144865 - 29145491
Alignment:
Q  15 catgaaaaatggagctaaagtttatgagcaaaagaagaaaagcacagaggaaaatgtcactaacagttactcttctaagacaattgattccattctgaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29144865 catgaaaaatggagctaaagtttatgagcaaaagaagaaaagcacagaggaaaatgtcactaacagttactcttctaagacgattgattccattctgaaa 29144964  T
Q  115 aggagattggttaagccaaattctgactcaattactccacatggttcaactagatctttgctcagcgacacaacttttttagatggctcttcagattatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29144965 aggagattggttaagccaaattctgactcaattactccacatggttcaactagatctttgctcagcgacacaacttttttagatggctcttcagattatg 29145064  T
Q  215 attctagcttggtattaactaaggttgatgataaaaaggatcaagttgttggtcaaaatgaagccaaccctgcatcgaaatcgagttcctcaagccaggt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  29145065 attctagcttggtattaactaaggttgatgataaaaaggatcaagttgttggtcaaaatgaagccaaccctgcatcgaaatcgggctcctcaagccaggt 29145164  T
Q  315 tagttttcttttctcgtagcatcgacactttaaattgaaggtgtgtctagtatatatccaacacatgtcggacacatttgacactcgtggttacattctc 414  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29145165 tagttttcttttctcgtagcatcaacactttaaattgaaggtgtgtctag----tatccaacacatgtcggacacatttgacactcgtggttacattctc 29145260  T
Q  415 tcaaattattactggtgtcaatgagaagtggcaatgtcgtgtccagtgtcaatgcttcatacgttttcttttttggcacttgcttaggattttccaatct 514  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  29145261 tcaaattattact-gtgtcaatgagaagtggcaatgtcgtgtccagtgtcaatgcttcatacgtttt-ttttttggcacttgtttaggattttccaatct 29145358  T
Q  515 taattttctgcatttattgctttctaagggctctctaattttaaatttatgatatgcttcgtgaatataactaagcaagtttggaagcatatatttgtag 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29145359 taattttctgcatttattgctttctaagggctctctaattttaaatttatgatatgcttcgtgaatataactaagcaagtttggaagcatatatttgtag 29145458  T
Q  615 aataaccatgactagttttatgaagcgaattga 647  Q
    |||||||||||||||||||||||||||||||||    
T  29145459 aataaccatgactagttttatgaagcgaattga 29145491  T

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