View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_low_63 (Length: 301)

Name: NF19382_low_63
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_low_63
NF19382_low_63
[»] chr7 (6 HSPs)
chr7 (1-285)||(25920983-25921268)
chr7 (175-250)||(23443445-23443520)
chr7 (175-250)||(23457318-23457393)
chr7 (174-231)||(29340716-29340773)
chr7 (238-278)||(2169048-2169088)
chr7 (174-230)||(23475024-23475080)
[»] chr2 (9 HSPs)
chr2 (172-250)||(37828597-37828675)
chr2 (170-281)||(37828627-37828746)
chr2 (181-252)||(36549407-36549478)
chr2 (171-249)||(41104616-41104695)
chr2 (123-198)||(29667695-29667768)
chr2 (171-246)||(41104680-41104754)
chr2 (180-230)||(4865550-4865599)
chr2 (208-250)||(4865561-4865603)
chr2 (192-230)||(25557931-25557969)
[»] chr5 (10 HSPs)
chr5 (168-230)||(17476112-17476174)
chr5 (121-248)||(7148390-7148522)
chr5 (121-230)||(17441297-17441403)
chr5 (174-230)||(41048742-41048798)
chr5 (236-278)||(7148514-7148556)
chr5 (205-250)||(7148420-7148465)
chr5 (171-232)||(7172459-7172520)
chr5 (125-230)||(7634829-7634931)
chr5 (205-250)||(17441347-17441392)
chr5 (180-233)||(17476093-17476145)
[»] chr1 (7 HSPs)
chr1 (172-250)||(30892093-30892171)
chr1 (170-248)||(29861580-29861656)
chr1 (172-253)||(30892059-30892139)
chr1 (171-233)||(29861550-29861611)
chr1 (175-250)||(30892124-30892199)
chr1 (168-230)||(51249295-51249357)
chr1 (206-250)||(29861553-29861597)
[»] chr4 (6 HSPs)
chr4 (174-278)||(12828503-12828616)
chr4 (174-247)||(53801424-53801497)
chr4 (168-251)||(20821762-20821845)
chr4 (199-233)||(12828496-12828530)
chr4 (199-233)||(53801417-53801451)
chr4 (121-165)||(20821865-20821908)
[»] chr3 (4 HSPs)
chr3 (170-278)||(30259644-30259761)
chr3 (174-250)||(30259712-30259788)
chr3 (171-219)||(7254989-7255037)
chr3 (205-249)||(30259745-30259789)
[»] chr6 (4 HSPs)
chr6 (171-253)||(34396898-34396981)
chr6 (170-230)||(1706749-1706808)
chr6 (206-253)||(5449590-5449637)
chr6 (206-253)||(5451150-5451197)
[»] chr8 (2 HSPs)
chr8 (231-278)||(29795878-29795925)
chr8 (171-231)||(1410631-1410691)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 25920983 - 25921268
Alignment:
Q  1 ctttctaaaagttagtttcaaagcattaacaataaactataacttagtgaaaattgttattctccnnnnnnnnnnn-cgttcactcc-atacaaacggac 98  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||            |||||||||| |||||||| ||     
T  25920983 ctttctaaaagttagtttcaaagcattaacaataaaccataacttagtgaaaattgttcttcacccaacaaaaaaaacgttcactcccatacaaactgat 25921082  T
Q  99 taaaacaccgcttgtgttaatgaactcacgcatgtgttaaaacccaacgtgatttaagttacgttcgttatccagcgtgaattaactcatgtaggttata 198  Q
    |||||||||  ||   | ||| || ||||| | |||||||| || ||| ||| |||||||||||||| ||||||| |||| |||||||||||||||||||    
T  25921083 taaaacaccatttacatgaattaattcacgtaggtgttaaatcc-aacatgacttaagttacgttcgctatccagtgtgagttaactcatgtaggttata 25921181  T
Q  199 aacccaacgtgagttaattcatgtaggttataaccgagcgtgagttaactcacgcgagaaatattttggtcagtttgtataggtgtg 285  Q
    |  ||||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||| |||||| ||| ||| |||| ||||||    
T  25921182 actccaacatgaattaactcatataggttataaccgagcgtgagttaactcacgcgagaagtattttagtccgttggtatgggtgtg 25921268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 23443520 - 23443445
Alignment:
Q  175 gtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataa-ccgagcgtgagttaactca 250  Q
    |||| |||||||| || |||||||| ||||||||||||||  |||||||| |||||| |||||| ||||||||||||    
T  23443520 gtgagttaactcacgtgggttataa-cccaacgtgagttagctcatgtagattataacccgagcatgagttaactca 23443445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 23457318 - 23457393
Alignment:
Q  175 gtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataa-ccgagcgtgagttaactca 250  Q
    |||| |||||||| || |||||||| ||||||||||||||  |||||||| |||||| |||||| ||||||||||||    
T  23457318 gtgagttaactcacgtgggttataa-cccaacgtgagttagctcatgtagattataacccgagcatgagttaactca 23457393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 29340773 - 29340716
Alignment:
Q  174 cgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataa 231  Q
    ||||| |||||||||||||||||||| |||| ||| |  ||| |||||||||||||||    
T  29340773 cgtgagttaactcatgtaggttataaccccaccgtaaaataactcatgtaggttataa 29340716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 2169088 - 2169048
Alignment:
Q  238 gtgagttaactcacgcgagaaatattttggtcagtttgtat 278  Q
    ||||||||||||| ||| | |||||||||||||||||||||    
T  2169088 gtgagttaactcaggcggggaatattttggtcagtttgtat 2169048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 23475080 - 23475024
Alignment:
Q  174 cgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttata 230  Q
    ||||| ||| ||||||||| |||||| |||| | |||||||| ||||||||||||||    
T  23475080 cgtgagttagctcatgtagattataaccccagcatgagttaactcatgtaggttata 23475024  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 37828597 - 37828675
Alignment:
Q  172 agcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataaccgagcgtgagttaactca 250  Q
    ||||||| ||||||||||||| |||||| |||| |||||||||| ||||||||||||||||| ||||||||||||||||    
T  37828597 agcgtgagttaactcatgtagcttataatcccagcgtgagttaactcatgtaggttataacccagcgtgagttaactca 37828675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 281
Target Start/End: Original strand, 37828627 - 37828746
Alignment:
Q  170 ccagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttata---------accgagcgtgagttaactcacgcgagaaat 260  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||||||         |||||||||||||||||||||| | |   |    
T  37828627 ccagcgtgagttaactcatgtaggttat-aacccagcgtgagttaactcatgtaggttatatttcagcttaccgagcgtgagttaactcacgtggggggt 37828725  T
Q  261 attttggtcagtttgtatagg 281  Q
    |||||||| ||||||||||||    
T  37828726 attttggtaagtttgtatagg 37828746  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 36549407 - 36549478
Alignment:
Q  181 taactcatgtaggttataaacccaacgtgagttaattcatgtaggttataaccgagcgtgagttaactcacg 252  Q
    ||||||| ||| ||||||| |||||| |||||||||||||||||||||||    ||||||||||||||||||    
T  36549407 taactcaagtaagttataaccccaacatgagttaattcatgtaggttatactttagcgtgagttaactcacg 36549478  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 249
Target Start/End: Original strand, 41104616 - 41104695
Alignment:
Q  171 cagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataacc-gagcgtgagttaactc 249  Q
    |||||||| ||||||||||||||||||||   || |||||||||| ||||||| |||||||||  ||||||| |||||||    
T  41104616 cagcgtgagttaactcatgtaggttataacttcatcgtgagttaactcatgtaagttataacctcagcgtgacttaactc 41104695  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 29667768 - 29667695
Alignment:
Q  123 ctcacgcatgtgttaaaacccaacgtgatttaagttacgttcgttatccagcgtgaattaactcatgtaggttata 198  Q
    ||||||||| ||||||| |||||||||| |||||| ||||||| || ||| ||||| |||||| ||||||||||||    
T  29667768 ctcacgcatatgttaaa-cccaacgtgacttaagtcacgttcgctaccca-cgtgagttaacttatgtaggttata 29667695  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 41104680 - 41104754
Alignment:
Q  171 cagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataaccgagcgtgagttaa 246  Q
    |||||||| ||||||| |||||||||||| |||| |||||  ||| ||||||||| ||||||| |||| |||||||    
T  41104680 cagcgtgacttaactcgtgtaggttataaccccagcgtga-ctaactcatgtaggatataacccagcgcgagttaa 41104754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 4865599 - 4865550
Alignment:
Q  180 ttaactcatgtaggttataaacccaacgtgagttaattcatgtaggttata 230  Q
    |||||||| ||||||||||| |||| |||||||||| ||||||||||||||    
T  4865599 ttaactcaagtaggttataa-cccagcgtgagttaactcatgtaggttata 4865550  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 4865603 - 4865561
Alignment:
Q  208 tgagttaattcatgtaggttataaccgagcgtgagttaactca 250  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||    
T  4865603 tgagttaactcaagtaggttataacccagcgtgagttaactca 4865561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 25557969 - 25557931
Alignment:
Q  192 ggttataaacccaacgtgagttaattcatgtaggttata 230  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  25557969 ggttataagcccaacgtgagttaactcatgtaggttata 25557931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 17476112 - 17476174
Alignment:
Q  168 atccagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttata 230  Q
    ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  17476112 atccagcgtgagttaactcatgtaggttataacctcaacgtgagttaattcatgtaggttata 17476174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 7148522 - 7148390
Alignment:
Q  121 aactcacgcatgtgttaaaacccaacgtgatttaagttacgttcgttatccag------cgtgaattaactcatgtaggttataaacccaacgtgagtta 214  Q
    ||||||||||||||||||| |||||| ||| |||||| ||||||| ||||||       ||||| |||||||| ||||||||||| | || |||||||||    
T  7148522 aactcacgcatgtgttaaa-cccaacatgacttaagtcacgttcgctatccacgtgagacgtgagttaactcacgtaggttataa-ctcagcgtgagtta 7148425  T
Q  215 attcatgtaggttataa-ccgagcgtgagttaact 248  Q
    | ||||||||||||||| || ||||||||||||||    
T  7148424 actcatgtaggttataaccccagcgtgagttaact 7148390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 17441297 - 17441403
Alignment:
Q  121 aactcacgcatgtgttaaaacccaacgtgatttaagttacgttcgttatccagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcat 220  Q
    |||||||||||||||||||  | ||||||| |||||| ||||||| || ||| ||||| |||||||||| ||||||||| |  | |||||||||| ||||    
T  17441297 aactcacgcatgtgttaaattc-aacgtgacttaagtcacgttcgctaccca-cgtgagttaactcatgcaggttataa-catagcgtgagttaactcat 17441393  T
Q  221 gtaggttata 230  Q
    ||||||||||    
T  17441394 gtaggttata 17441403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 41048798 - 41048742
Alignment:
Q  174 cgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttata 230  Q
    ||||| ||||||||||| |||||||| ||||||||||||||| |||| || ||||||    
T  41048798 cgtgagttaactcatgtcggttataaccccaacgtgagttaactcatatatgttata 41048742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 7148514 - 7148556
Alignment:
Q  236 gcgtgagttaactcacgcgagaaatattttggtcagtttgtat 278  Q
    ||||||||||||||||||| | ||||||||| |||||||||||    
T  7148514 gcgtgagttaactcacgcggggaatattttgatcagtttgtat 7148556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 7148465 - 7148420
Alignment:
Q  205 acgtgagttaattcatgtaggttataaccgagcgtgagttaactca 250  Q
    ||||||||||| ||| ||||||||||||  ||||||||||||||||    
T  7148465 acgtgagttaactcacgtaggttataactcagcgtgagttaactca 7148420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 7172459 - 7172520
Alignment:
Q  171 cagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataac 232  Q
    |||||||| |||||| ||||||||||||| | || |||||||||| |||||| | |||||||    
T  7172459 cagcgtgagttaacttatgtaggttataacctcagcgtgagttaactcatgtcgattataac 7172520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 230
Target Start/End: Original strand, 7634829 - 7634931
Alignment:
Q  125 cacgcatgtgttaaaacccaacgtgatttaagttacgttcgttatccagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtag 224  Q
    ||||||||||||||| || | | |||||||||| ||||||| |||||| ||| | ||| |||| | ||||||| | | || |||||||||||||||||||    
T  7634829 cacgcatgtgttaaa-cctatcatgatttaagtcacgttcgctatcca-cgttagttacctcacgcaggttatga-ctcagcgtgagttaattcatgtag 7634925  T
Q  225 gttata 230  Q
    ||||||    
T  7634926 gttata 7634931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 17441347 - 17441392
Alignment:
Q  205 acgtgagttaattcatgtaggttataaccgagcgtgagttaactca 250  Q
    ||||||||||| ||||| ||||||||||  ||||||||||||||||    
T  17441347 acgtgagttaactcatgcaggttataacatagcgtgagttaactca 17441392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 17476093 - 17476145
Alignment:
Q  180 ttaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataacc 233  Q
    |||||||| ||||||||||| || | |||||||||| |||||||||||||||||    
T  17476093 ttaactcacgtaggttataatcc-agcgtgagttaactcatgtaggttataacc 17476145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 30892171 - 30892093
Alignment:
Q  172 agcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataaccgagcgtgagttaactca 250  Q
    ||||||| |||||||||||| ||||||| || | |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  30892171 agcgtgagttaactcatgtatgttataacccaagcgtgagttaactcatgtaggttataacccagcgtaagttaactca 30892093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 29861580 - 29861656
Alignment:
Q  170 ccagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataaccgagcgtgagttaact 248  Q
    ||||||||| |||||||||||||||||||| || ||| |||||||| |||  |||||||||||| ||||||||||||||    
T  29861580 ccagcgtgagttaactcatgtaggttataaccctaacatgagttaactca--taggttataacctagcgtgagttaact 29861656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 30892139 - 30892059
Alignment:
Q  172 agcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataaccgagcgtgagttaactcacgc 253  Q
    ||||||| |||||||||||||||||||| |||| ||| |||||| ||||||| |||||||   |||||||||||| ||||||    
T  30892139 agcgtgagttaactcatgtaggttataa-cccagcgtaagttaactcatgtaagttataattcagcgtgagttaattcacgc 30892059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 29861550 - 29861611
Alignment:
Q  171 cagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataacc 233  Q
    |||||||| |||||||| | ||||||||| |||| |||||||||| |||||||||||||||||    
T  29861550 cagcgtgagttaactcacgcaggttataa-cccagcgtgagttaactcatgtaggttataacc 29861611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 30892199 - 30892124
Alignment:
Q  175 gtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataa-ccgagcgtgagttaactca 250  Q
    |||| |||||||| ||||||||| |||| | |||||||||| ||||||| ||||||| || ||||||||||||||||    
T  30892199 gtgagttaactcacgtaggttat-aacctagcgtgagttaactcatgtatgttataacccaagcgtgagttaactca 30892124  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 51249357 - 51249295
Alignment:
Q  168 atccagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttata 230  Q
    ||||||||||| ||||||||||||||||||||  | | |||||||| |  |||||||||||||    
T  51249357 atccagcgtgagttaactcatgtaggttataattctagcgtgagttgacacatgtaggttata 51249295  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 29861553 - 29861597
Alignment:
Q  206 cgtgagttaattcatgtaggttataaccgagcgtgagttaactca 250  Q
    |||||||||| ||| | ||||||||||| ||||||||||||||||    
T  29861553 cgtgagttaactcacgcaggttataacccagcgtgagttaactca 29861597  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 12828503 - 12828616
Alignment:
Q  174 cgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttata---------accgagcgtgagttaactcacgcgagaaatattt 264  Q
    ||||| |||||||||||||||||||| ||||  |||||||||  |||||||||||||         ||||| |||||||||||||||| |||| ||||||    
T  12828503 cgtgagttaactcatgtaggttataaccccattgtgagttaacccatgtaggttatacttcatcttaccgaacgtgagttaactcacgtgagagatattt 12828602  T
Q  265 tggtcagtttgtat 278  Q
    ||||||||||||||    
T  12828603 tggtcagtttgtat 12828616  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 53801424 - 53801497
Alignment:
Q  174 cgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataaccgagcgtgagttaac 247  Q
    ||||| |||||||||||||||||||| |||  |||||||||||||||||| ||||||||  |||||||||||||    
T  53801424 cgtgagttaactcatgtaggttataaccccggcgtgagttaattcatgtacgttataactcagcgtgagttaac 53801497  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 20821845 - 20821762
Alignment:
Q  168 atccagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataaccgagcgtgagttaactcac 251  Q
    ||||| ||||| ||||||||||||||||||||  ||  |||||||||| ||||||||||||||||  ||||| |||||||||||    
T  20821845 atccaacgtgagttaactcatgtaggttataacaccggcgtgagttaactcatgtaggttataactaagcgtaagttaactcac 20821762  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 12828496 - 12828530
Alignment:
Q  199 aacccaacgtgagttaattcatgtaggttataacc 233  Q
    ||||||||||||||||| |||||||||||||||||    
T  12828496 aacccaacgtgagttaactcatgtaggttataacc 12828530  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 53801417 - 53801451
Alignment:
Q  199 aacccaacgtgagttaattcatgtaggttataacc 233  Q
    ||||||||||||||||| |||||||||||||||||    
T  53801417 aacccaacgtgagttaactcatgtaggttataacc 53801451  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 20821908 - 20821865
Alignment:
Q  121 aactcacgcatgtgttaaaacccaacgtgatttaagttacgttcg 165  Q
    ||||||||||||||||||| |||||||||| |||||| |||||||    
T  20821908 aactcacgcatgtgttaaa-cccaacgtgaattaagtcacgttcg 20821865  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 30259761 - 30259644
Alignment:
Q  170 ccagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttata---------accgagcgtgagttaactcacgcgagaaat 260  Q
    ||||| ||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||         ||||| |||||||||||||||| ||  | |    
T  30259761 ccagcatgagttaactcttgtaggttataaccccaacgtgagttaactcatgtaggttatacttcatctgaccgaacgtgagttaactcacgtgacgagt 30259662  T
Q  261 attttggtcagtttgtat 278  Q
    ||||||||||||||||||    
T  30259661 attttggtcagtttgtat 30259644  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 30259788 - 30259712
Alignment:
Q  174 cgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataa-ccgagcgtgagttaactca 250  Q
    ||||| ||||||||||||||| |||| |||| | |||||||| || |||||||||||| || | ||||||||||||||    
T  30259788 cgtgagttaactcatgtaggtcataa-cccagcatgagttaactcttgtaggttataaccccaacgtgagttaactca 30259712  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 7255037 - 7254989
Alignment:
Q  171 cagcgtgaattaactcatgtaggttataaacccaacgtgagttaattca 219  Q
    |||||||| |||||||| |||||||||||||||||| ||| || |||||    
T  7255037 cagcgtgagttaactcacgtaggttataaacccaacatgactttattca 7254989  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 30259789 - 30259745
Alignment:
Q  205 acgtgagttaattcatgtaggttataaccgagcgtgagttaactc 249  Q
    ||||||||||| |||||||||| |||||| ||| |||||||||||    
T  30259789 acgtgagttaactcatgtaggtcataacccagcatgagttaactc 30259745  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 34396898 - 34396981
Alignment:
Q  171 cagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataa-ccgagcgtgagttaactcacgc 253  Q
    ||||||||| ||||||||||||||||||| ||||   |||||||| ||||||||||||||| |  |||||||||||||||||||    
T  34396898 cagcgtgaactaactcatgtaggttataaccccagtttgagttaactcatgtaggttataatctcagcgtgagttaactcacgc 34396981  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 1706749 - 1706808
Alignment:
Q  170 ccagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttata 230  Q
    |||||||||||||||||||||||||||| |||||||||||| |||| || |||||||||||    
T  1706749 ccagcgtgaattaactcatgtaggttat-aacccaacgtgaattaactcgtgtaggttata 1706808  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 5449637 - 5449590
Alignment:
Q  206 cgtgagttaattcatgtaggttataaccgagcgtgagttaactcacgc 253  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||    
T  5449637 cgtgagttaactcatgtaggttataacccagcgtgagttaactcacgc 5449590  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 5451197 - 5451150
Alignment:
Q  206 cgtgagttaattcatgtaggttataaccgagcgtgagttaactcacgc 253  Q
    ||||||||||  |||||||||||||||| |||||||||||||||||||    
T  5451197 cgtgagttaacgcatgtaggttataacccagcgtgagttaactcacgc 5451150  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 29795878 - 29795925
Alignment:
Q  231 accgagcgtgagttaactcacgcgagaaatattttggtcagtttgtat 278  Q
    ||||||||||||||||||||| || ||| ||||||||||| |||||||    
T  29795878 accgagcgtgagttaactcacacgggaagtattttggtcaatttgtat 29795925  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 1410631 - 1410691
Alignment:
Q  171 cagcgtgaattaactcatgtaggttataaacccaacgtgagttaattcatgtaggttataa 231  Q
    |||||||| |||||| ||| ||||||||||| || ||||| |||| |||||||| ||||||    
T  1410631 cagcgtgagttaactaatgaaggttataaacacagcgtgaattaactcatgtagtttataa 1410691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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