View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_low_67 (Length: 287)

Name: NF19382_low_67
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_low_67
NF19382_low_67
[»] chr1 (31 HSPs)
chr1 (11-271)||(34380451-34380711)
chr1 (176-247)||(28689421-28689492)
chr1 (191-247)||(26184778-26184834)
chr1 (184-257)||(27140498-27140571)
chr1 (185-247)||(26916231-26916293)
chr1 (186-247)||(11639395-11639456)
chr1 (195-247)||(11695891-11695943)
chr1 (173-237)||(15799741-15799805)
chr1 (187-239)||(17628637-17628689)
chr1 (169-257)||(32515403-32515491)
chr1 (154-234)||(38170637-38170717)
chr1 (154-245)||(6231763-6231854)
chr1 (197-268)||(45394124-45394195)
chr1 (197-247)||(6292523-6292573)
chr1 (181-247)||(19412571-19412637)
chr1 (204-246)||(30257714-30257756)
chr1 (185-247)||(43029380-43029442)
chr1 (184-270)||(43771844-43771930)
chr1 (197-238)||(4202141-4202182)
chr1 (174-247)||(4549260-4549333)
chr1 (155-244)||(4768777-4768866)
chr1 (185-270)||(15579489-15579574)
chr1 (166-247)||(28935835-28935916)
chr1 (170-247)||(29007679-29007756)
chr1 (206-243)||(30371182-30371219)
chr1 (150-247)||(31517683-31517780)
chr1 (163-252)||(33723338-33723427)
chr1 (186-246)||(15581285-15581345)
chr1 (197-257)||(35925710-35925770)
chr1 (154-234)||(45327623-45327703)
chr1 (171-235)||(51730527-51730591)
[»] chr6 (23 HSPs)
chr6 (185-254)||(2034424-2034493)
chr6 (163-244)||(34939777-34939858)
chr6 (150-247)||(32171497-32171594)
chr6 (169-248)||(3738098-3738177)
chr6 (150-232)||(32976023-32976105)
chr6 (197-238)||(2027396-2027437)
chr6 (169-247)||(2460113-2460191)
chr6 (173-247)||(32171349-32171423)
chr6 (185-238)||(821838-821891)
chr6 (186-247)||(4420673-4420734)
chr6 (191-247)||(7785728-7785784)
chr6 (195-247)||(9667973-9668025)
chr6 (172-259)||(2767714-2767800)
chr6 (197-247)||(283125-283175)
chr6 (205-247)||(27909636-27909678)
chr6 (188-230)||(33284290-33284332)
chr6 (186-247)||(7148696-7148757)
chr6 (186-247)||(9027608-9027669)
chr6 (163-228)||(32917246-32917311)
chr6 (197-237)||(696642-696682)
chr6 (187-247)||(2117433-2117493)
chr6 (163-247)||(8420153-8420237)
chr6 (184-244)||(34939546-34939606)
[»] chr4 (22 HSPs)
chr4 (163-247)||(28406942-28407026)
chr4 (186-247)||(21157798-21157859)
chr4 (169-239)||(7063530-7063600)
chr4 (169-247)||(27123314-27123392)
chr4 (167-247)||(23819119-23819199)
chr4 (186-238)||(28614787-28614839)
chr4 (204-244)||(29467621-29467661)
chr4 (164-239)||(1965979-1966053)
chr4 (195-238)||(2980453-2980496)
chr4 (157-244)||(3176054-3176141)
chr4 (168-247)||(6987702-6987781)
chr4 (185-267)||(19304557-19304639)
chr4 (209-247)||(19429739-19429777)
chr4 (204-238)||(27721756-27721790)
chr4 (185-238)||(25571299-25571352)
chr4 (167-236)||(25793048-25793117)
chr4 (190-247)||(52645733-52645790)
chr4 (186-239)||(52754637-52754690)
chr4 (195-239)||(19304964-19305008)
chr4 (185-257)||(25309556-25309628)
chr4 (204-244)||(32799737-32799777)
chr4 (216-268)||(43824292-43824344)
[»] chr8 (22 HSPs)
chr8 (172-247)||(5088882-5088957)
chr8 (156-238)||(11569406-11569488)
chr8 (197-270)||(10383892-10383965)
chr8 (163-244)||(14949899-14949980)
chr8 (154-247)||(6950352-6950445)
chr8 (169-247)||(30918143-30918220)
chr8 (185-238)||(10062119-10062172)
chr8 (169-238)||(11415193-11415262)
chr8 (186-245)||(9835879-9835938)
chr8 (204-247)||(11795122-11795165)
chr8 (169-247)||(21130644-21130720)
chr8 (220-271)||(39561554-39561605)
chr8 (197-239)||(3254263-3254305)
chr8 (185-271)||(7918424-7918510)
chr8 (185-239)||(11813083-11813137)
chr8 (217-271)||(26284805-26284859)
chr8 (154-247)||(9700031-9700124)
chr8 (182-247)||(11183575-11183640)
chr8 (204-257)||(25869263-25869316)
chr8 (150-239)||(30013256-30013345)
chr8 (170-270)||(5227542-5227640)
chr8 (203-247)||(5231831-5231875)
[»] chr5 (23 HSPs)
chr5 (166-247)||(28586725-28586806)
chr5 (150-244)||(1899187-1899280)
chr5 (169-249)||(12595678-12595758)
chr5 (186-238)||(41957430-41957482)
chr5 (157-272)||(11457104-11457218)
chr5 (154-272)||(37611162-37611280)
chr5 (154-272)||(37787892-37788010)
chr5 (208-247)||(15074750-15074789)
chr5 (204-247)||(32194076-32194119)
chr5 (168-247)||(37526160-37526239)
chr5 (168-247)||(37690597-37690676)
chr5 (185-244)||(38338357-38338415)
chr5 (157-247)||(4273327-4273417)
chr5 (157-239)||(6109521-6109603)
chr5 (184-270)||(14295513-14295599)
chr5 (197-247)||(14331397-14331447)
chr5 (185-239)||(32172691-32172745)
chr5 (205-247)||(35963271-35963313)
chr5 (197-247)||(40205064-40205114)
chr5 (185-238)||(11700356-11700409)
chr5 (196-247)||(11667169-11667221)
chr5 (186-238)||(13264084-13264136)
chr5 (186-245)||(16380550-16380610)
[»] chr7 (23 HSPs)
chr7 (169-241)||(36598318-36598390)
chr7 (169-244)||(33894660-33894735)
chr7 (166-245)||(48157079-48157158)
chr7 (171-247)||(39360053-39360129)
chr7 (186-238)||(39539760-39539812)
chr7 (163-240)||(44686967-44687044)
chr7 (204-247)||(12234886-12234929)
chr7 (186-237)||(12834941-12834992)
chr7 (185-244)||(27496386-27496444)
chr7 (185-244)||(27503044-27503102)
chr7 (204-247)||(44151477-44151520)
chr7 (169-247)||(20553133-20553211)
chr7 (195-245)||(39345503-39345553)
chr7 (169-239)||(39907958-39908027)
chr7 (190-247)||(3610723-3610780)
chr7 (186-247)||(39551527-39551588)
chr7 (154-247)||(46082066-46082159)
chr7 (150-235)||(46223016-46223101)
chr7 (195-247)||(9423582-9423634)
chr7 (204-244)||(27517853-27517893)
chr7 (173-245)||(28727729-28727801)
chr7 (197-237)||(43219634-43219674)
chr7 (169-257)||(45859489-45859576)
[»] chr3 (26 HSPs)
chr3 (169-247)||(11039301-11039379)
chr3 (204-270)||(31010409-31010475)
chr3 (163-244)||(30923855-30923935)
chr3 (169-245)||(1810009-1810085)
chr3 (184-247)||(20192583-20192646)
chr3 (169-247)||(14548683-14548761)
chr3 (172-245)||(46031022-46031096)
chr3 (150-247)||(50004682-50004780)
chr3 (186-235)||(1217779-1217828)
chr3 (186-239)||(27290880-27290933)
chr3 (184-236)||(42817199-42817251)
chr3 (186-237)||(24624250-24624301)
chr3 (217-271)||(27792878-27792932)
chr3 (206-244)||(48048981-48049019)
chr3 (208-270)||(48286811-48286873)
chr3 (214-271)||(237403-237460)
chr3 (166-247)||(23785285-23785366)
chr3 (204-257)||(36200116-36200169)
chr3 (186-247)||(43115086-43115147)
chr3 (203-252)||(45432935-45432984)
chr3 (207-239)||(22214659-22214691)
chr3 (197-237)||(39723230-39723270)
chr3 (206-270)||(40665436-40665500)
chr3 (190-238)||(41724251-41724299)
chr3 (209-257)||(49546486-49546534)
chr3 (207-247)||(53848063-53848103)
[»] chr2 (23 HSPs)
chr2 (185-271)||(43065428-43065514)
chr2 (185-245)||(18884899-18884959)
chr2 (185-272)||(15120188-15120275)
chr2 (154-236)||(787373-787455)
chr2 (173-247)||(8820258-8820332)
chr2 (169-239)||(14316107-14316177)
chr2 (185-238)||(10285394-10285447)
chr2 (185-248)||(1830074-1830137)
chr2 (204-247)||(1939329-1939372)
chr2 (204-247)||(25796197-25796240)
chr2 (204-247)||(32821839-32821882)
chr2 (197-236)||(33192243-33192282)
chr2 (204-247)||(34652033-34652076)
chr2 (197-247)||(1647266-1647316)
chr2 (186-268)||(25661116-25661198)
chr2 (197-247)||(28677649-28677699)
chr2 (157-247)||(41809195-41809285)
chr2 (204-245)||(10285892-10285933)
chr2 (196-244)||(27237882-27237930)
chr2 (167-239)||(27699489-27699561)
chr2 (197-236)||(41293152-41293192)
chr2 (186-222)||(41851143-41851179)
chr2 (186-222)||(41851922-41851958)
[»] scaffold0072 (1 HSPs)
scaffold0072 (197-257)||(4979-5039)
[»] scaffold0003 (1 HSPs)
scaffold0003 (189-235)||(306368-306414)
[»] scaffold0004 (1 HSPs)
scaffold0004 (191-244)||(98624-98677)
[»] scaffold0091 (1 HSPs)
scaffold0091 (170-270)||(6959-7057)
[»] scaffold0020 (1 HSPs)
scaffold0020 (195-239)||(159961-160005)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 34380711 - 34380451
Alignment:
Q  11 ttattcttatgtattattgaggtgaaatcaatatgaaagatttaaatttggactactggaactatgacaatgtaatagggctgtgtttgttgattgcggg 110  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34380711 ttattcttatgcattattgagatgaaatcaatatgagagatttaaatttggactactggaactatgacaatgtaatagggctgtgtttgttgattgcggg 34380612  T
Q  111 taaagggttgtttgtattggattattcgagcttatttagtatttactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgac 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34380611 taaagggttgtttgtattggattattcgagcttatttagtatttactgacacaaacatttgtgagactggtttagagagcttacggaaacaggttatgac 34380512  T
Q  211 atttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaacaa 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34380511 atttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaacaa 34380451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 28689421 - 28689492
Alignment:
Q  176 actggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||| |||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||  |||||||    
T  28689421 actgttttagagaacttacggaaacagcttatgacatgtccataagttgttttcagcttattttcataagct 28689492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 26184834 - 26184778
Alignment:
Q  191 ttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||||||| ||||||||| |||||||||||||||||| ||||||| |||||||    
T  26184834 ttacggaaacagcttatgacatgtccataagctgttttcagattatttccataagct 26184778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 27140571 - 27140498
Alignment:
Q  184 agagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgata 257  Q
    |||||| ||| |||||||| ||||||||| |||||||| ||||||||||||||||  ||||||| | |||||||    
T  27140571 agagagtttaaggaaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgata 27140498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 26916293 - 26916231
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||| |||||||||| ||| |||| ||||||||| ||||| ||||||||||| |||||||    
T  26916293 gagagctaacggaaacagtttaagacaattccataagttgtttccagcttatttccataagct 26916231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 11639395 - 11639456
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||| | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||    
T  11639395 agagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagct 11639456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 11695943 - 11695891
Alignment:
Q  195 ggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||| ||||||||| ||||||||||||||||| |||||||  |||||||    
T  11695943 ggaaacagtttatgacatgtccataagctgttttcaacttattttcataagct 11695891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 15799805 - 15799741
Alignment:
Q  173 gagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatt 237  Q
    ||||||| || ||||||| |||||||||||  |||| ||| ||||||||||| ||||||||||||    
T  15799805 gagactgtttgagagagcatacggaaacagcatatggcatctccataagctggtttcagcttatt 15799741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 17628689 - 17628637
Alignment:
Q  187 gagcttacggaaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    ||||||| |||||||  ||||||||| ||||||||||||||||||| ||||||    
T  17628689 gagcttatggaaacaacttatgacatgtccataagctgttttcagcatatttc 17628637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 32515403 - 32515491
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgata 257  Q
    ||||||||||| ||  ||||||||| ||||||||  |||||||| || ||||| |||||||| ||||| || ||||||| | |||||||    
T  32515403 ttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatctataagctctccatgata 32515491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 38170637 - 38170717
Alignment:
Q  154 tactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagctt 234  Q
    ||||||||  |||| ||||||||||| ||  ||||||||| | |||||| ||||||||| | |||||| ||||||||||||    
T  38170637 tactggcatgaacacttgtgagactgcttgggagagcttatgaaaacagcttatgacatgttcataagttgttttcagctt 38170717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 6231763 - 6231854
Alignment:
Q  154 tactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataag 245  Q
    |||| ||| |||||||||||||| || | | || |||| | |||||||  | ||||||| ||||||| |||||||||||||||||| |||||    
T  6231763 tactagcataaacatttgtgagattgttctggatagctcatggaaacaactaatgacatgtccataaactgttttcagcttatttctataag 6231854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 45394195 - 45394124
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaa 268  Q
    |||||| |||||| || || |||||||||||||| ||||||||||||| || |||| ||||| ||| |||||    
T  45394195 aaacagcttatgagatgtcgataagctgttttcaacttatttcaataaactttacaggataacttatgaaaa 45394124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 6292573 - 6292523
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||| ||||||||| | |||||||||||||||||||||||  |||||||    
T  6292573 aaacagcttatgacatgttcataagctgttttcagcttattttcataagct 6292523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 19412571 - 19412637
Alignment:
Q  181 tttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||| ||| |||||||  ||||||||| ||||||||||| |||  ||||||||| |||||||    
T  19412571 tttagagagtttatggaaacaacttatgacatgtccataagctgattttggcttatttccataagct 19412637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 30257756 - 30257714
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataagc 246  Q
    ||||||||| | |||||||||||||||||||||||| ||||||    
T  30257756 ttatgacatgttcataagctgttttcagcttatttctataagc 30257714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 43029380 - 43029442
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||| | |||||| |||| |||| || ||||||| ||||||||||||||| |||||||    
T  43029380 gagagcttatgaaaacagtttattacatgtctataagctattttcagcttatttccataagct 43029442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 43771930 - 43771844
Alignment:
Q  184 agagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaaca 270  Q
    |||||||| | |||||||  ||||||||| ||| ||| |||||||| | ||| | | ||||||| | ||||||||||||||||||||    
T  43771930 agagagctcatggaaacaatttatgacatgtccgtaaactgttttcgggttaatcccataagctctccatgataagttacgaaaaca 43771844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 4202141 - 4202182
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    |||||| ||||||||| |||||||||| ||||||||||||||    
T  4202141 aaacagcttatgacatgtccataagctattttcagcttattt 4202182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 4549333 - 4549260
Alignment:
Q  174 agactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||| || ||||| |||  |||||||  ||||||||| || ||||| ||||||||||||||||| |||||||    
T  4549333 agactgcttaagagaacttttggaaacaatttatgacatgtctataagttgttttcagcttatttccataagct 4549260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 4768777 - 4768866
Alignment:
Q  155 actggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    ||||||| ||||| ||||||||| | ||  || | |||||| |||||| ||| ||||| |||||||  ||||||||||||||||| ||||    
T  4768777 actggcataaacacttgtgagacagtttgggaaaacttacgaaaacagcttacgacatgtccataacttgttttcagcttatttccataa 4768866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 15579574 - 15579489
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaaca 270  Q
    ||||||||  |||||||  ||||||||| |||||||| |||| |||||||||||| |||| ||  ||||||||  |||||| ||||    
T  15579574 gagagcttgtggaaacaacttatgacatgtccataagttgttctcagcttatttccataaactcaacatgatagcttacgagaaca 15579489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 28935835 - 28935916
Alignment:
Q  166 catttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||||||||| ||  |||||||||  ||  ||| ||||||||| |||||||| | |||| |||||||||| |||||||    
T  28935835 catttgtgagactgtttgggagagcttatagagtcagtttatgacatgtccataagttttttttagcttatttccataagct 28935916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 29007679 - 29007756
Alignment:
Q  170 tgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||||| ||| || |||||  |||||||  |||||| || | |||||| ||||||||||||||||| |||||||    
T  29007679 tgtgagactgttttggatagcttttggaaacaatttatgatatgttcataagttgttttcagcttatttcgataagct 29007756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 30371219 - 30371182
Alignment:
Q  206 atgacatttccataagctgttttcagcttatttcaata 243  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  30371219 atgacatgtccataagttgttttcagcttatttcaata 30371182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 31517683 - 31517780
Alignment:
Q  150 tatttactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||||||| || || ||||||||||| ||  |||| ||||   |||||  | ||||||| | |||||||||||||||||||||||  |||||||    
T  31517683 tatttactggcataagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataagct 31517780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 33723338 - 33723427
Alignment:
Q  163 aaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtaca 252  Q
    ||||| ||||||||||| ||  || | |||| |||||||| | ||||||| | ||| || ||||||||||||||||| ||||||| ||||    
T  33723338 aaacacttgtgagactgcttgggaaaacttatggaaacagctcatgacatgttcatgagatgttttcagcttatttccataagctttaca 33723427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 15581345 - 15581285
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagc 246  Q
    |||||| | |||||||  ||||||||| || |||||||||||||||| |||||| ||||||    
T  15581345 agagctaatggaaacaacttatgacatgtctataagctgttttcagcctatttctataagc 15581285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 35925770 - 35925710
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgata 257  Q
    |||||| ||||||||| | ||||||||||||||| |||||||| |||| || | |||||||    
T  35925770 aaacagcttatgacatgttcataagctgttttcaacttatttccataaactctccatgata 35925710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 45327703 - 45327623
Alignment:
Q  154 tactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagctt 234  Q
    ||||||||| | || |||||||||| |||  | ||||||| |||||||  ||||||||| |||||||  ||||||||||||    
T  45327703 tactggcacgagcacttgtgagactagttgggggagcttatggaaacaacttatgacatgtccataaattgttttcagctt 45327623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 51730591 - 51730527
Alignment:
Q  171 gtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagctta 235  Q
    ||||||||| | | ||||||||| |||||||  ||||||||||| ||||||  ||||||||||||    
T  51730591 gtgagactgttgtggagagcttatggaaacaccttatgacattttcataagtagttttcagctta 51730527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 2034424 - 2034493
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatg 254  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  2034424 gagagtttatggaaacagcttatgacatttccataagctgttttcagcttatttcattaagctctacatg 2034493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 34939858 - 34939777
Alignment:
Q  163 aaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    |||||||||||| |||| ||| |||||||||||||||||| ||||||||| |||||||  ||||||||||||||||| ||||    
T  34939858 aaacatttgtgaaactgttttggagagcttacggaaacagcttatgacatgtccataaattgttttcagcttatttccataa 34939777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 32171594 - 32171497
Alignment:
Q  150 tatttactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||| || || |||||||||||||||||  ||||||||| |||||||  |||||| |  ||||| | |||||||||||||||||| |||||||    
T  32171594 tatttactgacataagcatttgtgagactggttgggagagcttaaggaaacaacttatgatacctccatgaactgttttcagcttatttccataagct 32171497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 3738177 - 3738098
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctg 248  Q
    ||||||||||| || | ||| |||  |||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||    
T  3738177 ttgtgagactgtttgaaagatcttgtggaaacagcttatgacatgtccataagctgctttcaacttatttcaataagctg 3738098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 32976105 - 32976023
Alignment:
Q  150 tatttactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagc 232  Q
    |||||||||||| ||  | ||||||||||| ||   ||||||||  ||||||| |||||||||||||||||||||||||||||    
T  32976105 tatttactggcataagtacttgtgagactgtttggaagagcttatagaaacagcttatgacatttccataagctgttttcagc 32976023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 2027396 - 2027437
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  2027396 aaacagcttatgacatttccataagctgttttcagcttattt 2027437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 2460113 - 2460191
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||||| || |||||||||| |||||||  ||||||||| ||  |||| |||||||| |||||||| |||||||    
T  2460113 ttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagct 2460191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 32171349 - 32171423
Alignment:
Q  173 gagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||| || |||||||||| | |||||| ||||||||  |||| ||||| ||||||||||||||| |||||||    
T  32171349 gagactgtttgagagagcttatgaaaacagcttatgacaagtccagaagctattttcagcttatttccataagct 32171423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 821891 - 821838
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    ||||||||| || || |||||||||||| | |||||||||||||||||||||||    
T  821891 gagagcttatgggaataggttatgacatgttcataagctgttttcagcttattt 821838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 4420734 - 4420673
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||  ||||||  ||||||||| | |||||||||||||||||||||||| |||||||    
T  4420734 agagcttatagaaacaaattatgacatgttcataagctgttttcagcttatttccataagct 4420673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 7785728 - 7785784
Alignment:
Q  191 ttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||| ||||||| ||||||||| || ||||| ||||||||||||||||| |||||||    
T  7785728 ttacagaaacagcttatgacatgtctataagttgttttcagcttatttccataagct 7785784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 9667973 - 9668025
Alignment:
Q  195 ggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||  ||||||||| ||||||||||||||||| |||||||| |||||||    
T  9667973 ggaaacaacttatgacatgtccataagctgttttcaacttatttccataagct 9668025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 2767714 - 2767800
Alignment:
Q  172 tgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgataag 259  Q
    |||||||| ||  ||||||||  |||||||| ||||||||| |||||||||||||| |||||| |||| |||| || | |||||||||    
T  2767714 tgagactgcttaggagagcttgtggaaacagcttatgacatgtccataagctgtttccagctt-tttccataaactctccatgataag 2767800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 283175 - 283125
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||| ||||||||| ||||||| || ||||||||||||||| |||||||    
T  283175 aaacagcttatgacatgtccataaactattttcagcttatttctataagct 283125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 27909636 - 27909678
Alignment:
Q  205 tatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||| |||||||| ||||||||||||||||| |||||||    
T  27909636 tatgacatgtccataagttgttttcagcttatttccataagct 27909678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 33284332 - 33284290
Alignment:
Q  188 agcttacggaaacaggttatgacatttccataagctgttttca 230  Q
    |||||| |||||||  |||||||||||||||||||||||||||    
T  33284332 agcttagggaaacaacttatgacatttccataagctgttttca 33284290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 7148757 - 7148696
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||||||||||  ||||||| | |||||||||| |||||| |||||||  |||||||    
T  7148757 agagcttacggaaacaacttatgacttgtccataagctattttcaacttattttcataagct 7148696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 9027669 - 9027608
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||| ||||| |  ||||||||| |||||||| ||||||||||||||||  |||||||    
T  9027669 agagcttatggaaataacttatgacatgtccataagttgttttcagcttattttcataagct 9027608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 32917311 - 32917246
Alignment:
Q  163 aaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgtttt 228  Q
    ||||| ||||||||||| ||  ||||||||| |||||||  ||||||||| |||||||||| ||||    
T  32917311 aaacacttgtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagctttttt 32917246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 696682 - 696642
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttatt 237  Q
    |||||| ||||||||| | ||||||||||||||||||||||    
T  696682 aaacagcttatgacatgttcataagctgttttcagcttatt 696642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 2117493 - 2117433
Alignment:
Q  187 gagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||  ||||||  ||||| ||| || |||||||||||| ||||||||||||||||||    
T  2117493 gagcttatagaaacaatttatggcatgtctataagctgtttttagcttatttcaataagct 2117433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 8420153 - 8420237
Alignment:
Q  163 aaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||| ||||||||||| |   |||||||||  |||| || ||||||||| |||| ||||| |||||| |||||||| |||||||    
T  8420153 aaacacttgtgagactgttagtgagagcttatagaaatagcttatgacatgtccacaagctattttcaacttatttccataagct 8420237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 34939606 - 34939546
Alignment:
Q  184 agagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    |||||||||| |||||||  ||||||||  ||| |||| ||||||||||||||||| ||||    
T  34939606 agagagcttatggaaacaacttatgacacgtccgtaagttgttttcagcttatttccataa 34939546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 28407026 - 28406942
Alignment:
Q  163 aaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||||||||||||||| ||||||||||||||||||  | ||||||| | ||||| || ||| ||||||||||| |||||||    
T  28407026 aaacatttgtgagactggttgagagagcttacggaaacaactcatgacatattcataaactatttgcagcttatttccataagct 28406942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 21157859 - 21157798
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||| ||||||| ||||||||||| || |||||||||| |||||||||| |||||||    
T  21157859 agagcttacagaaacagcttatgacatttacaaaagctgtttttagcttatttccataagct 21157798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 7063600 - 7063530
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    ||||||||||| || ||||| |||| || ||||  |||||||||||||||||||| |||||||||| ||||    
T  7063600 ttgtgagactgtttaagagatcttatgggaacaatttatgacatttccataagctattttcagcttttttc 7063530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 27123314 - 27123392
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||||| || |||||||||| |||||||  ||||||||| ||  |||| |||||||| |||||||| |||||||    
T  27123314 ttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagct 27123392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 23819199 - 23819119
Alignment:
Q  167 atttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||||||| ||   |||| ||| | |||||| ||||||||| |||||||| |||||||| |||||||| |||||||    
T  23819199 atttgtgagactgtttggaagagtttaagaaaacagcttatgacatgtccataagttgttttcatcttatttctataagct 23819119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 28614787 - 28614839
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    |||||||| |||||||  ||||||||| |||||||||| ||||||||||||||    
T  28614787 agagcttatggaaacaatttatgacatatccataagctcttttcagcttattt 28614839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 29467621 - 29467661
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  29467621 ttatgacatgtccataagctgttttcagcttatttccataa 29467661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 1966053 - 1965979
Alignment:
Q  164 aacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    |||||||||||||||| ||||| ||||||| | |||||  ||||||||| | ||||||||||||| | ||||||||    
T  1966053 aacatttgtgagactgttttag-gagcttatgaaaacaacttatgacatgttcataagctgtttttaacttatttc 1965979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 2980453 - 2980496
Alignment:
Q  195 ggaaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||    
T  2980453 ggaaataggttatgacatgtccataagctgtgttcagcttattt 2980496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 3176054 - 3176141
Alignment:
Q  157 tggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    ||||||||||| |||||| |||| ||  ||||||||| | |||||  ||||| ||| || ||||| ||||||||||||||||| ||||    
T  3176054 tggcacaaacacttgtgaaactgtttaggagagcttatgaaaacatcttatgtcatgtctataagttgttttcagcttatttccataa 3176141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 6987702 - 6987781
Alignment:
Q  168 tttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||||||| ||  ||||||||| ||| |||  ||||||||| ||||||| || |||||| |||||||| |||||||    
T  6987702 tttgtgagactgtttgggagagcttatggatacaacttatgacatgtccataaactattttcaacttatttccataagct 6987781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 19304639 - 19304557
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagctt-atttcaataagctgtacatgataagttacgaaa 267  Q
    ||||||||||| |||||| |||||||||||||||||||| |||||| ||| ||||| ||||| | | |||||||| ||| ||||    
T  19304639 gagagcttacg-aaacagcttatgacatttccataagctcttttcaacttaatttccataagttctccatgataacttatgaaa 19304557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 19429777 - 19429739
Alignment:
Q  209 acatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  19429777 acattgccataagctgttttcagcttatttccataagct 19429739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 27721790 - 27721756
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttattt 238  Q
    ||||||||| |||||||||||||||||||||||||    
T  27721790 ttatgacatatccataagctgttttcagcttattt 27721756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 25571352 - 25571299
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    |||| |||| |||||||| |||||| || | |||||||||||||||||||||||    
T  25571352 gagaacttatggaaacagtttatgatatgttcataagctgttttcagcttattt 25571299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 25793048 - 25793117
Alignment:
Q  167 atttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttat 236  Q
    |||||| ||| || |||| |||| ||| |||||||||||||||||  |||||||||| |||||| |||||    
T  25793048 atttgttagattgctttaaagaggttatggaaacaggttatgacacgtccataagctattttcaacttat 25793117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 52645733 - 52645790
Alignment:
Q  190 cttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||||||| | ||| ||| ||||||||||||| ||| |||||||| |||||||    
T  52645733 cttacggaaacagctaatggcatgtccataagctgttgtcaacttatttctataagct 52645790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 52754690 - 52754637
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    |||||||| | |||||| ||||||| | ||||||||||| ||||||||||||||    
T  52754690 agagcttatgaaaacagtttatgacgtgtccataagctgctttcagcttatttc 52754637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 19305008 - 19304964
Alignment:
Q  195 ggaaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    |||||||| ||||||||| |||||||| |||||||||||| ||||    
T  19305008 ggaaacagcttatgacatgtccataagttgttttcagcttgtttc 19304964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 25309628 - 25309556
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgata 257  Q
    ||||||||| |||||||  ||| ||| | ||| ||||||||||| |||||||||| ||||||| | |||||||    
T  25309628 gagagcttatggaaacaacttaagacttatccgtaagctgttttaagcttatttccataagctttccatgata 25309556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 32799737 - 32799777
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    ||||||||  |||||||||||||||||||||||||| ||||    
T  32799737 ttatgacacatccataagctgttttcagcttatttcgataa 32799777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 43824344 - 43824292
Alignment:
Q  216 cataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaa 268  Q
    |||||| ||||||||||||||||| ||||||| | || ||||| |||||||||    
T  43824344 cataagttgttttcagcttatttccataagctttccaggataacttacgaaaa 43824292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 5088957 - 5088882
Alignment:
Q  172 tgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||  || ||||||||| |||||||| |||| |||| ||||||||||||||||| ||||||||||||||||    
T  5088957 tgagactgtcttggagagcttatggaaacagtttataacatgtccataagctgttttcaacttatttcaataagct 5088882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 11569406 - 11569488
Alignment:
Q  156 ctggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    |||||| || || ||||||||||| || |||||||||| |||||||| ||||||||| | |||||| ||||||||||||||||    
T  11569406 ctggcataaccacttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattt 11569488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 10383965 - 10383892
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaaca 270  Q
    |||||| ||||||||||| |||||||||||| ||||||||||| ||||||| || ||||||  |||||||||||    
T  10383965 aaacagcttatgacattttcataagctgtttacagcttatttccataagctctatatgatagtttacgaaaaca 10383892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 14949980 - 14949899
Alignment:
Q  163 aaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    ||||||||||||||||| ||  ||||||||| | ||| |  ||||||||| |||||||||||||||||||||||||| ||||    
T  14949980 aaacatttgtgagactgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttatttctataa 14949899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 6950445 - 6950352
Alignment:
Q  154 tactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||| |||||||||||||| || ||  ||||||||| | |||||   |||||||| || ||||| ||||||||||||||||| |||||||    
T  6950445 tactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttcagcttatttccataagct 6950352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 30918220 - 30918143
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||||| || |||||||||| | |||||  || ||||||||| ||||| ||||||||||||||||| |||||||    
T  30918220 ttgtgagactgtttgagagagcttatgaaaacaacttgtgacatttc-ataagttgttttcagcttatttccataagct 30918143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 10062119 - 10062172
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    ||||||||| || ||||  |||||||||||| ||||||||||||||||||||||    
T  10062119 gagagcttatggcaacattttatgacatttctataagctgttttcagcttattt 10062172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 11415262 - 11415193
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    |||||||| || ||||||||| ||| |||||||| |||| |||| |||||||||| || |||||||||||    
T  11415262 ttgtgagattgttttagagagtttatggaaacagcttataacatgtccataagctattctcagcttattt 11415193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 9835879 - 9835938
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataag 245  Q
    |||||||| | |||||| ||||||||| | ||||||||||||||| |||||||| |||||    
T  9835879 agagcttatgtaaacagcttatgacatgttcataagctgttttcatcttatttccataag 9835938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 11795165 - 11795122
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||| ||||||| |||||||||||||||||| |||||||    
T  11795165 ttatgacatgtccataacctgttttcagcttatttccataagct 11795122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 21130720 - 21130644
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||||| || |||||||||| ||||| || || |||||| |||||  |||||||| |||||||||| |||||||    
T  21130720 ttgtgagactgtttgagagagcttatggaaatagcttttgacatgtccat--gctgttttgagcttatttccataagct 21130644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 39561554 - 39561605
Alignment:
Q  220 agctgttttcagcttatttcaataagctgtacatgataagttacgaaaacaa 271  Q
    |||||||||||||||||||| ||||||| | |||||||  ||||||||||||    
T  39561554 agctgttttcagcttatttccataagcttttcatgatagcttacgaaaacaa 39561605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 3254305 - 3254263
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    |||||| ||||||||| | ||||||||||||||||||||||||    
T  3254305 aaacagcttatgacatgttcataagctgttttcagcttatttc 3254263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 7918424 - 7918510
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaacaa 271  Q
    ||||||||| | |||||  ||| ||||| | |||||||||||| || |||||||||||||||| | || ||||  ||||||||||||    
T  7918424 gagagcttatgaaaacaacttaagacatgttcataagctgtttccaacttatttcaataagctctccaagatagcttacgaaaacaa 7918510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 11813083 - 11813137
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    |||| |||| |||||||  ||||||||| |||||| |||||||||||||||||||    
T  11813083 gagaacttatggaaacaatttatgacatatccataggctgttttcagcttatttc 11813137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 26284805 - 26284859
Alignment:
Q  217 ataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaacaa 271  Q
    ||||| ||||||||||||||||  ||||||| |||| ||||| ||||||||||||    
T  26284805 ataagttgttttcagcttattttcataagctatacaggataacttacgaaaacaa 26284859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 9700124 - 9700031
Alignment:
Q  154 tactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||| ||| ||||| ||||||||||  || |||||||||  | || ||  ||||||||| ||||||||||||||||| |||||||  |||||||    
T  9700124 tactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtccataagctgttttcaccttattttcataagct 9700031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 11183640 - 11183575
Alignment:
Q  182 ttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||||||   |||||  |||||| || || ||||||||||||||||||||||| |||||||    
T  11183640 ttagagagcttataaaaacaacttatgatatgtctataagctgttttcagcttatttccataagct 11183575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 25869263 - 25869316
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataagctgtacatgata 257  Q
    ||||||||| |||||||| ||||||||||||||||| |||| || | |||||||    
T  25869263 ttatgacatgtccataagttgttttcagcttatttccataaactctccatgata 25869316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 30013345 - 30013256
Alignment:
Q  150 tatttactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    |||||||||||| || |||||||||||||| ||| || |||||| |||||||  |||| |  | ||| ||| || |||||||||||||||    
T  30013345 tatttactggcataagcatttgtgagactgtttttgaaagcttatggaaacatcttatcaagtgtccctaaactattttcagcttatttc 30013256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 270
Target Start/End: Complemental strand, 5227640 - 5227542
Alignment:
Q  170 tgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaac 269  Q
    |||||||||| | | ||||||||| | |||||| ||||||||||||||| | ||||||| |||||||||  ||||||| | |||||||  |||| |||||    
T  5227640 tgtgagactgttatggagagcttaag-aaacagtttatgacatttccattatctgtttt-agcttattttcataagctcttcatgatagcttacaaaaac 5227543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 5231875 - 5231831
Alignment:
Q  203 gttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||||| ||||| ||||||||||| |||||||| |||||||    
T  5231875 gttatgacatgtccatgagctgttttcatcttatttcgataagct 5231831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 28586725 - 28586806
Alignment:
Q  166 catttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||| |||| ||  ||||||||| ||||| || ||||||||| ||| |||||||||||||||||||||| |||||||    
T  28586725 catttgtgaaactgtttgggagagcttatggaaatagcttatgacatatccgtaagctgttttcagcttatttcgataagct 28586806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 1899280 - 1899187
Alignment:
Q  150 tatttactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    |||||||| ||| |||||| |||||||||| |||  |||||||||  |||||| ||||||||| | |||||| ||||||||||||||||| ||||    
T  1899280 tatttactagcataaacatatgtgagactgttttgaagagcttaca-aaacagcttatgacatgtgcataagttgttttcagcttatttccataa 1899187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 12595678 - 12595758
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgt 249  Q
    ||||||||||  || |||||||||| |||||||| ||||  ||| | ||||||| |||||||||||||||| |||||||||    
T  12595678 ttgtgagactatttgagagagcttaaggaaacagcttattgcatgttcataagccgttttcagcttatttctataagctgt 12595758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 41957430 - 41957482
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||| |||||||    
T  41957430 agagcttacggaaacagcttatgacatgtccataagttgttttcatcttattt 41957482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 272
Target Start/End: Complemental strand, 11457218 - 11457104
Alignment:
Q  157 tggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgat 256  Q
    ||||| ||||| ||||||||||| |||  |||||||| |||||||  ||||||||| ||||||||||| |||||  ||||||| ||||||| | || |||    
T  11457218 tggcagaaacacttgtgagactgttttgaagagcttatggaaacaacttatgacatgtccataagctg-tttcatattatttctataagctctccaagat 11457120  T
Q  257 aagttacgaaaacaat 272  Q
    || ||  |||||||||    
T  11457119 aacttttgaaaacaat 11457104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 272
Target Start/End: Original strand, 37611162 - 37611280
Alignment:
Q  154 tactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacat 253  Q
    |||||||||||  | |||||||| || || |||||||||| | |||||  || |||||| | |||||||||||||||| ||||||| ||||||| | ||     
T  37611162 tactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaa 37611261  T
Q  254 gataagttacgaaaacaat 272  Q
    ||||  ||| |||||||||    
T  37611262 gatagcttatgaaaacaat 37611280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 272
Target Start/End: Original strand, 37787892 - 37788010
Alignment:
Q  154 tactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacat 253  Q
    |||||||||||  | |||||||| || || |||||||||| | |||||  || |||||| | |||||||||||||||| ||||||| ||||||| | ||     
T  37787892 tactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaa 37787991  T
Q  254 gataagttacgaaaacaat 272  Q
    ||||  ||| |||||||||    
T  37787992 gatagcttatgaaaacaat 37788010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 15074750 - 15074789
Alignment:
Q  208 gacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  15074750 gacatgtccataagctgttttcagcttatttccataagct 15074789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 32194076 - 32194119
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||||||||||||| ||||||||||||||||  |||||||    
T  32194076 ttatgacatttccataagttgttttcagcttatttatataagct 32194119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 37526160 - 37526239
Alignment:
Q  168 tttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||||||| || |||||||||| | | |||   |||||||| |  ||||||||||||||||||||||| |||||||    
T  37526160 tttgtgagactgtttgagagagcttatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagct 37526239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 37690597 - 37690676
Alignment:
Q  168 tttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||||||| || |||||||||| | | |||   |||||||| |  ||||||||||||||||||||||| |||||||    
T  37690597 tttgtgagactgtttgagagagcttatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagct 37690676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 38338415 - 38338357
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    |||||||||||||||||| ||||||||| |||||||| || ||| |||||||||| ||||    
T  38338415 gagagcttacggaaacagcttatgacatgtccataagttggttt-agcttatttccataa 38338357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 4273327 - 4273417
Alignment:
Q  157 tggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||| |||||||||||||| || || ||||| | || |||||||| ||||||| | || ||||| |||||||| |||||| | |||||||    
T  4273327 tggcataaacatttgtgagattgtttgagagaacctatggaaacagcttatgacttgtctataagttgttttcaacttattgctataagct 4273417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 6109603 - 6109521
Alignment:
Q  157 tggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    ||||| ||||| |||||||| |  ||| ||||||||| ||||| |  |||||| || |||||||| |||||||||||||||||    
T  6109603 tggcataaacacttgtgagaatattttggagagcttatggaaaaaaattatgatatgtccataagttgttttcagcttatttc 6109521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 14295599 - 14295513
Alignment:
Q  184 agagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaaca 270  Q
    |||||||||| | |||||| |||||| || || ||||||||||||||||||| ||| | ||||| | || ||||  |||||||||||    
T  14295599 agagagcttatgaaaacagcttatgatatgtcgataagctgttttcagcttacttctaaaagctctccaggatagcttacgaaaaca 14295513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 14331447 - 14331397
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||| ||||||||| ||||||||||| |||||||||||||  |||||||    
T  14331447 aaacagcttatgacatgtccataagctgatttcagcttattttcataagct 14331397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 32172745 - 32172691
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    ||||||||| |||||||  ||||||||| |||||||||  |||||||||||||||    
T  32172745 gagagcttatggaaacaacttatgacatgtccataagccattttcagcttatttc 32172691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 35963313 - 35963271
Alignment:
Q  205 tatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||| |||||||| ||||||||||||||||| |||||||    
T  35963313 tatgacatgtccataagttgttttcagcttatttccataagct 35963271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 40205064 - 40205114
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||| |||| |||| ||||||| |||||||||||||||||| |||||||    
T  40205064 aaacagcttataacatgtccataatctgttttcagcttatttctataagct 40205114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 11700356 - 11700409
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    ||||| ||| |||||||  ||||||||| |||||||||||||||||| ||||||    
T  11700356 gagagtttatggaaacaacttatgacatgtccataagctgttttcagattattt 11700409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 11667221 - 11667169
Alignment:
Q  196 gaaacaggttatgacatttccataagctgtttt-cagcttatttcaataagct 247  Q
    ||||||| ||||||||| ||||||| ||||||| ||||||||||| |||||||    
T  11667221 gaaacagattatgacatgtccataaactgtttttcagcttatttctataagct 11667169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 13264084 - 13264136
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    |||| ||| |||||||| ||||| ||| | |||||||||||||||||||||||    
T  13264084 agagtttatggaaacagcttatgccatattcataagctgttttcagcttattt 13264136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 16380550 - 16380610
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgtttt-cagcttatttcaataag 245  Q
    |||| ||| |||||||| ||| ||||| ||||||||||||||| ||||||||||| |||||    
T  16380550 agagtttatggaaacagcttacgacatgtccataagctgttttgcagcttatttccataag 16380610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 36598318 - 36598390
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaa 241  Q
    |||||||| || || |||||||||| |||||||  ||||||||| | ||||||||||||||||||||||||||    
T  36598318 ttgtgagattgtttgagagagcttatggaaacatcttatgacatgttcataagctgttttcagcttatttcaa 36598390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 33894735 - 33894660
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    ||||||||||| ||  ||||||||| | ||||||  |||||||| |||||||| ||||||||||||||||||||||    
T  33894735 ttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttatttcaataa 33894660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 48157079 - 48157158
Alignment:
Q  166 catttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataag 245  Q
    |||||||||||||| ||  |||||||||  ||||||  ||||| ||| |||||||||||||||||||||||||| |||||    
T  48157079 catttgtgagactgtttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatttccataag 48157158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 39360129 - 39360053
Alignment:
Q  171 gtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||| || | |||| ||| |||||||  ||||||||| |||||||| || ||||||||||||||||||||||    
T  39360129 gtgagactgtttgatagagtttatggaaacaacttatgacatatccataagttgctttcagcttatttcaataagct 39360053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 39539760 - 39539812
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    |||| |||||||||||  ||||||||| |||||||||||||||||||||||||    
T  39539760 agagtttacggaaacaacttatgacatgtccataagctgttttcagcttattt 39539812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 44687044 - 44686967
Alignment:
Q  163 aaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttca 240  Q
    ||||||||||||||||  || | |||||||| |||||||  ||||||||| ||||| ||||||||||| |||| ||||    
T  44687044 aaacatttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaacttaattca 44686967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 12234886 - 12234929
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||| || ||||||||||||||||||||||| |||||||    
T  12234886 ttatgacatgtctataagctgttttcagcttatttccataagct 12234929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 12834941 - 12834992
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttatt 237  Q
    |||| ||| |||||||| ||||||||| ||||||| ||||||||||||||||    
T  12834941 agagattatggaaacagcttatgacatgtccataaactgttttcagcttatt 12834992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 27496386 - 27496444
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    ||||||||| |||||||  | ||||||| |||||||||||||||||||||||||| ||||    
T  27496386 gagagcttaaggaaacac-tcatgacatgtccataagctgttttcagcttatttccataa 27496444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 27503044 - 27503102
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    ||||||||| |||||||  | ||||||| |||||||||||||||||||||||||| ||||    
T  27503044 gagagcttaaggaaacac-tcatgacatgtccataagctgttttcagcttatttccataa 27503102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 44151477 - 44151520
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||    
T  44151477 ttatgacatgtccataagatgttttcagcttatttccataagct 44151520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 20553211 - 20553133
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||||| |   ||||||||| |||||||| ||| ||||| | |||||| ||||||||| ||||||| |||||||    
T  20553211 ttgtgagactgttcaggagagcttatggaaacagcttacgacatgttcataagttgttttcagattatttccataagct 20553133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 39345553 - 39345503
Alignment:
Q  195 ggaaacaggttatgacatttccataagctgttttcagcttatttcaataag 245  Q
    |||||||| ||||||||| |||||||| || |||||||||||||| |||||    
T  39345553 ggaaacagtttatgacatgtccataagttgctttcagcttatttccataag 39345503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 39907958 - 39908027
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    |||| |||||| || |||||||||| |||| || |||||||||| ||||||||||| ||||| ||||||||    
T  39907958 ttgttagactgcttgagagagcttatggaa-catgttatgacatgtccataagctggtttcatcttatttc 39908027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 3610723 - 3610780
Alignment:
Q  190 cttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||| |||||||| | ||||||| |||||||||  ||||||||||||||| |||||||    
T  3610723 cttatggaaacagctaatgacatgtccataagcctttttcagcttatttctataagct 3610780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 39551527 - 39551588
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||| ||| |||||||  ||||||||| |||||||| |||| |||||||||||| |||||||    
T  39551527 agaggttatggaaacaacttatgacatgtccataaggtgttgtcagcttatttccataagct 39551588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 46082159 - 46082066
Alignment:
Q  154 tactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||| ||||| || |||||||| |   ||||||||| | |||||  |||||||||  ||||||| ||||||||||||||||  |||||||    
T  46082159 tactggcataaacaattttgagactgttaatgagagcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagct 46082066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 46223016 - 46223101
Alignment:
Q  150 tatttactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagctta 235  Q
    ||||||| |||| ||||| ||||||||||| || ||  |  ||| |||||||| ||  ||||| ||||||||||||||||||||||    
T  46223016 tatttaccggcataaacacttgtgagactgtttgaggcattttatggaaacagcttgcgacatgtccataagctgttttcagctta 46223101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 9423582 - 9423634
Alignment:
Q  195 ggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||  ||||||||| | |||||| ||||||||||||||||||| |||||    
T  9423582 ggaaacaatttatgacatgttcataagttgttttcagcttatttcaagaagct 9423634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 27517853 - 27517893
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    ||||||||| ||||||||| |||||||||||||||| ||||    
T  27517853 ttatgacatgtccataagcagttttcagcttatttccataa 27517893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 28727729 - 28727801
Alignment:
Q  173 gagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataag 245  Q
    ||||||| || |||||||||| |||||| | ||||||||| | | || | ||||||||||||||||| |||||    
T  28727729 gagactgtttgagagagcttatggaaacggcttatgacatgttcgtatgttgttttcagcttatttctataag 28727801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 43219634 - 43219674
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttatt 237  Q
    |||||| ||||||||| | ||||||||||||||||||||||    
T  43219634 aaacagcttatgacatgttcataagctgttttcagcttatt 43219674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 45859489 - 45859576
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgata 257  Q
    ||||||||||| ||   ||||||||||||||||   |||||||| | |||| | ||||||||||||||||| ||||||| | |||||||    
T  45859489 ttgtgagactgtttggaagagcttacggaaacaacatatgacatgttcata-gttgttttcagcttatttctataagctcttcatgata 45859576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 11039301 - 11039379
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||||| || | |||||||| |||||||  ||||||||| |||||||| |||||||||||||| || |||||||    
T  11039301 ttgtgagactgtttgaaagagcttatggaaacatattatgacatgtccataagttgttttcagcttatctccataagct 11039379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 31010475 - 31010409
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaaca 270  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||| |  |||||| ||||||||||||    
T  31010475 ttatgacatgtccataagctgttttcagcttaattccataagctctctatgataggttacgaaaaca 31010409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 30923855 - 30923935
Alignment:
Q  163 aaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    ||||| ||||||||||| ||  ||||||| | |||||||| ||||||||| || ||||||||||||||||||||||| ||||    
T  30923855 aaacacttgtgagactgtttatgagagct-atggaaacagcttatgacatgtctataagctgttttcagcttatttctataa 30923935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 1810085 - 1810009
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataag 245  Q
    ||||||||||  || ||||||||||||||||||  ||||||||| ||||| || ||||||| ||||||||| |||||    
T  1810085 ttgtgagactatttgagagagcttacggaaacaacttatgacatgtccatgagttgttttctgcttatttctataag 1810009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 20192583 - 20192646
Alignment:
Q  184 agagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||||  ||||||| ||||||||| ||||||||||||||||| || ||||| |||||||    
T  20192583 agagagcttatagaaacagcttatgacatgtccataagctgttttcaactcatttccataagct 20192646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 14548683 - 14548761
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||||| || |||||||||| | |||||   ||||||||||  ||| ||||||||||||||||||| |||||||    
T  14548683 ttgtgagactgtttgagagagcttatgaaaacaacgtatgacattttaataggctgttttcagcttatttccataagct 14548761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 46031096 - 46031022
Alignment:
Q  172 tgagactggtttagagagcttacggaaacaggttatgacatt-tccataagctgttttcagcttatttcaataag 245  Q
    |||||||| || ||||| |||||| ||||||  ||||||||| | ||||||||||||||||||||||| ||||||    
T  46031096 tgagactgtttcagagaacttacgaaaacagcctatgacattattcataagctgttttcagcttattttaataag 46031022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 50004780 - 50004682
Alignment:
Q  150 tatttactggcacaaacatttgtgagactggtttagagagc-ttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||| || || || |||| |||||| || |||| || ||| |||||||  ||||||||| | | ||||||||||||||||||||||||||||||    
T  50004780 tatttactgacataagcaattgtaagactgtttgagagggccttatggaaacaacttatgacatgttcttaagctgttttcagcttatttcaataagct 50004682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 1217779 - 1217828
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagctta 235  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||| ||||    
T  1217779 agagcttacggaaacagcttatgacatgtccataagttgttttcatctta 1217828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 27290880 - 27290933
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    |||||||| | |||||| |||||||||  |||||||||||||||||||||||||    
T  27290880 agagcttatgaaaacagcttatgacatgcccataagctgttttcagcttatttc 27290933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 42817199 - 42817251
Alignment:
Q  184 agagagcttacggaaacaggttatgacatttccataagctgttttcagcttat 236  Q
    |||||||||| ||||||||  |||||||| |||||||| ||||||||||||||    
T  42817199 agagagcttatggaaacagcatatgacatgtccataagttgttttcagcttat 42817251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 24624301 - 24624250
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttatt 237  Q
    |||||||| | |||||| ||||||||| ||||||| ||||||||||||||||    
T  24624301 agagcttatgaaaacagcttatgacatgtccataaactgttttcagcttatt 24624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 27792932 - 27792878
Alignment:
Q  217 ataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaacaa 271  Q
    ||||| ||||||||||||||||| ||||||| |||||||||  ||| ||||||||    
T  27792932 ataagttgttttcagcttatttctataagctctacatgatagtttatgaaaacaa 27792878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 48048981 - 48049019
Alignment:
Q  206 atgacatttccataagctgttttcagcttatttcaataa 244  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  48048981 atgacatgtccataagctgttttcagcttatttccataa 48049019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 48286811 - 48286873
Alignment:
Q  208 gacatttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaaca 270  Q
    ||||| ||||||| | ||| |||||||||||| ||||||| |||||||||| ||| |||||||    
T  48286811 gacatgtccataaaccgttatcagcttatttctataagctctacatgataacttatgaaaaca 48286873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 237460 - 237403
Alignment:
Q  214 tccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaacaa 271  Q
    ||||||||||||||||||||||||||  |||||| || | ||||| ||| ||||||||    
T  237460 tccataagctgttttcagcttatttccgtaagctctataggataacttatgaaaacaa 237403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 23785366 - 23785285
Alignment:
Q  166 catttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||||||||||  |  ||||||| || |||||||| ||||| | | |||||||| |||||||||||| |||| |||||||    
T  23785366 catttgtgagactattaaagagagcatatggaaacagcttatggcgtgtccataagttgttttcagcttgtttccataagct 23785285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 36200169 - 36200116
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataagctgtacatgata 257  Q
    ||||||||| |||||||| ||||||||||||||||| || |||| |||| ||||    
T  36200169 ttatgacatgtccataagttgttttcagcttatttccatgagctctacaggata 36200116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 43115147 - 43115086
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||| ||| |||||||  ||||||||| |||||||  ||||||||||||||||| |||||||    
T  43115147 agagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagct 43115086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 45432935 - 45432984
Alignment:
Q  203 gttatgacatttccataagctgttttcagcttatttcaataagctgtaca 252  Q
    |||||||||| | |||||| ||||||||||||||||| ||||||| ||||    
T  45432935 gttatgacatgttcataagttgttttcagcttatttccataagctctaca 45432984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 22214659 - 22214691
Alignment:
Q  207 tgacatttccataagctgttttcagcttatttc 239  Q
    |||||| ||||||||||||||||||||||||||    
T  22214659 tgacatgtccataagctgttttcagcttatttc 22214691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 39723230 - 39723270
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttatt 237  Q
    |||||| ||||||||| | ||||||||||||||||||||||    
T  39723230 aaacagcttatgacatgttcataagctgttttcagcttatt 39723270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 40665500 - 40665436
Alignment:
Q  206 atgacatttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaaca 270  Q
    ||||||| | |||||||||||||||||||||||  ||||||| | || ||||| ||| |||||||    
T  40665500 atgacatgttcataagctgttttcagcttatttttataagctctccaagataacttatgaaaaca 40665436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 41724299 - 41724251
Alignment:
Q  190 cttacggaaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    |||| |||||||  ||||||||| |||||||| ||||||||||||||||    
T  41724299 cttatggaaacaacttatgacatgtccataagttgttttcagcttattt 41724251  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 49546486 - 49546534
Alignment:
Q  209 acatttccataagctgttttcagcttatttcaataagctgtacatgata 257  Q
    ||||||| ||||| |||||||||| |||||||||||||| | |||||||    
T  49546486 acatttctataagttgttttcagcatatttcaataagctctccatgata 49546534  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 53848063 - 53848103
Alignment:
Q  207 tgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||| |||||||||||||||| ||||||||| |||||||    
T  53848063 tgacatgtccataagctgttttcggcttatttctataagct 53848103  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 43065428 - 43065514
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaacaa 271  Q
    ||||||||| | |||||  ||||||||| |||||||  ||||||||||||||||||||||||| | || ||||| ||| ||||||||    
T  43065428 gagagcttatgaaaacaacttatgacatgtccataaattgttttcagcttatttcaataagctctccacgataacttatgaaaacaa 43065514  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 18884959 - 18884899
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataag 245  Q
    |||||||||  ||||||| ||||||||||||||| |||||||||||| ||||||| |||||    
T  18884959 gagagcttatagaaacagcttatgacatttccattagctgttttcagattatttccataag 18884899  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 15120275 - 15120188
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaacaat 272  Q
    ||||||||| |||||||  ||||||||| | ||| ||||||||| |||||||||  ||||||| | |||||||  |||||||||||||    
T  15120275 gagagcttatggaaacaacttatgacatgttcattagctgttttaagcttattttgataagctctccatgatagcttacgaaaacaat 15120188  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 787455 - 787373
Alignment:
Q  154 tactggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttat 236  Q
    |||||||| || || |||||| |||| ||  |||| |||| | |||||| ||||||||| |||||||||||||||||||||||    
T  787455 tactggcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtccataagctgttttcagcttat 787373  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 8820258 - 8820332
Alignment:
Q  173 gagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||| || ||||| |||| |||||||| || |||||| | || ||||||||||||||||||||| |||||||    
T  8820258 gagactgcttaagagaccttatggaaacagcttctgacatgttcacaagctgttttcagcttatttccataagct 8820332  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 14316107 - 14316177
Alignment:
Q  169 ttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    ||||||||||  ||| ||||||||| |||||||  ||||||||| |  |||||||||||||||||||||||    
T  14316107 ttgtgagactattttggagagcttatggaaacaacttatgacatatgtataagctgttttcagcttatttc 14316177  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 10285447 - 10285394
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttattt 238  Q
    ||||||| | ||| ||| |||||||||| |||||||||||||||||||||||||    
T  10285447 gagagctaatggagacaagttatgacatgtccataagctgttttcagcttattt 10285394  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 1830137 - 1830074
Alignment:
Q  185 gagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctg 248  Q
    ||||||||| |||||||  ||||||||| |||||| |  |||||||||||||||| ||||||||    
T  1830137 gagagcttatggaaacatcttatgacatgtccatagggagttttcagcttatttccataagctg 1830074  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 1939329 - 1939372
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||| ||||||||||||||||| |||||||| |||||||    
T  1939329 ttatgacatgtccataagctgttttcaacttatttccataagct 1939372  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 25796197 - 25796240
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||| |||| |||||||| |||||||||||||||||||||||||    
T  25796197 ttattacatatccataagttgttttcagcttatttcaataagct 25796240  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 32821882 - 32821839
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||    
T  32821882 ttatgacatgtccataagctgttttcagtttatttctataagct 32821839  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 33192282 - 33192243
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttat 236  Q
    |||||| ||||||||| |||||||||||||||||||||||    
T  33192282 aaacagtttatgacatatccataagctgttttcagcttat 33192243  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 34652033 - 34652076
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||||||| ||||||||||||||||| |||||||| |||||||    
T  34652033 ttatgacatgtccataagctgttttcaacttatttccataagct 34652076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 1647316 - 1647266
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||| |||||||||   |||||||||||||||||||||||| |||||||    
T  1647316 aaacagcttatgacatgctcataagctgttttcagcttatttccataagct 1647266  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 25661198 - 25661116
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaa 268  Q
    |||||||||||||| || |||||| || ||| ||| |||||||||| ||||||| ||||||| | || ||||  |||||||||    
T  25661198 agagcttacggaaatagcttatgaaatgtccttaaactgttttcagattatttccataagctcttcaggatagtttacgaaaa 25661116  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 28677649 - 28677699
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    |||||| ||||||||||| |||||| ||||||| ||||||||| |||||||    
T  28677649 aaacagcttatgacattttcataagttgttttcggcttatttccataagct 28677699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 41809195 - 41809285
Alignment:
Q  157 tggcacaaacatttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagct 247  Q
    ||||| ||||| ||||||||||| ||   |||||||  |||||||  ||||||||| | |||||| |||||| |||||||||| |||||||    
T  41809195 tggcataaacacttgtgagactgattgtaagagcttgtggaaacaacttatgacatgttcataagttgtttttagcttatttccataagct 41809285  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 10285933 - 10285892
Alignment:
Q  204 ttatgacatttccataagctgttttcagcttatttcaataag 245  Q
    ||||||||| ||||||||||||||||| |||||||| |||||    
T  10285933 ttatgacatgtccataagctgttttcaacttatttccataag 10285892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 27237882 - 27237930
Alignment:
Q  196 gaaacaggttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    ||||||| ||||||||| | ||||||||||||| |||||||||| ||||    
T  27237882 gaaacagcttatgacatgtacataagctgtttttagcttatttccataa 27237930  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 27699489 - 27699561
Alignment:
Q  167 atttgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    ||||||||||||| || |||||| ||| | |||||  |||||||||  ||| | |||||||||||||||||||    
T  27699489 atttgtgagactgtttgagagagtttatgaaaacaacttatgacatcaccacatgctgttttcagcttatttc 27699561  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 41293152 - 41293192
Alignment:
Q  197 aaacaggttatgacatttc-cataagctgttttcagcttat 236  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  41293152 aaacagcttatgacatttcgcataagctgttttcagcttat 41293192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 41851143 - 41851179
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagc 222  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  41851143 agagcttacggaaacagcttatgacatgtccataagc 41851179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 41851922 - 41851958
Alignment:
Q  186 agagcttacggaaacaggttatgacatttccataagc 222  Q
    |||||||||| |||||||||||||||| |||||||||    
T  41851922 agagcttacgcaaacaggttatgacatgtccataagc 41851958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 5039 - 4979
Alignment:
Q  197 aaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgata 257  Q
    |||||| ||||||||| ||||||||||| ||| |||||||||| ||||||| |||||||||    
T  5039 aaacagcttatgacatgtccataagctgattttagcttatttctataagctatacatgata 4979  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 306414 - 306368
Alignment:
Q  189 gcttacggaaacaggttatgacatttccataagctgttttcagctta 235  Q
    ||||| |||||||| |||||||||  |||||||||||||||||||||    
T  306414 gcttatggaaacagcttatgacatgcccataagctgttttcagctta 306368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 98624 - 98677
Alignment:
Q  191 ttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataa 244  Q
    ||||| ||| || ||||||||| | ||||||||||||||| |||||||||||||    
T  98624 ttacgaaaatagcttatgacatgttcataagctgttttcaacttatttcaataa 98677  T

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Target: scaffold0091 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 270
Target Start/End: Complemental strand, 7057 - 6959
Alignment:
Q  170 tgtgagactggtttagagagcttacggaaacaggttatgacatttccataagctgttttcagcttatttcaataagctgtacatgataagttacgaaaac 269  Q
    |||||||||| | | ||||||||| | |||||| ||||||||||||||| | ||||||| |||||||||  ||||||| | |||||||  |||| |||||    
T  7057 tgtgagactgttatggagagcttaag-aaacagtttatgacatttccattatctgtttt-agcttattttcataagctcttcatgatagcttacaaaaac 6960  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 159961 - 160005
Alignment:
Q  195 ggaaacaggttatgacatttccataagctgttttcagcttatttc 239  Q
    |||||||| ||||||||| || |||||| ||||||||||||||||    
T  159961 ggaaacagtttatgacatgtctataagcagttttcagcttatttc 160005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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