View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_69 (Length: 284)
Name: NF19382_low_69
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 14560142 - 14559886
Alignment:
| Q |
12 |
ctctaaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaa |
111 |
Q |
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| T |
14560142 |
ctctaaaaccaaaagtgaatcccacctcaacacttaagaaatttcaatcaattaaactcctttcatgataataacgtgtttcatatgcttgttgtgacaa |
14560043 |
T |
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| Q |
112 |
gcttttccctccttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
211 |
Q |
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| T |
14560042 |
gcttttccctccttcaccaccacagttttgtgtcagtggaggtccacacaactcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
14559943 |
T |
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| Q |
212 |
ccagtttgtatttttcccaccaagtgattacaagagaggttcataactgaaagaaat |
268 |
Q |
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| T |
14559942 |
ccagtttgtatttttcccaccaagtgattacaagagaggttcataactgaaagaaat |
14559886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 24 - 264
Target Start/End: Complemental strand, 14569885 - 14569645
Alignment:
| Q |
24 |
aagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaagcttttccctcc |
123 |
Q |
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| T |
14569885 |
aagtgaattccaactcaacacttaagaaattctaatcaattgaacccctgtcgtgaaaataaggtgtttcatatgcttgttgttacaagcttttccctcc |
14569786 |
T |
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| Q |
124 |
ttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgttccagtttgtatt |
223 |
Q |
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| T |
14569785 |
ttcaccaacacaattttgtgtcagtggaggtccacacaactctttattacctataagtgaatcttcttgaaatgattgaatttgtgttccaggtggtatt |
14569686 |
T |
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| Q |
224 |
tttcccaccaagtgattacaagagaggttcataactgaaag |
264 |
Q |
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| T |
14569685 |
tttcccaccaaatgagtacaagagaggttcgtaactgaaag |
14569645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 32549371 - 32549252
Alignment:
| Q |
149 |
ggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgttccagtttgtatttttcccaccaagtgattacaagaga |
248 |
Q |
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||||||||| | ||| |||||||||| |||||||||||| |||||||||||| ||| ||||| |||||| ||||| ||||||||||||| ||| | || | |
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| T |
32549371 |
ggaggtccaaatagcccttcattgccaataaatgaatctgcttgaaatgattgaatctgtgtcccagttggtattcttcccaccaagtggttatatgaaa |
32549272 |
T |
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| Q |
249 |
ggttcataactgaaagaaat |
268 |
Q |
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||||||| |||| ||||||| |
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| T |
32549271 |
ggttcatgactgcaagaaat |
32549252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 32549498 - 32549451
Alignment:
| Q |
16 |
aaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaat |
63 |
Q |
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|||||||||||||||||||| |||| || | ||||||||||||||||| |
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| T |
32549498 |
aaaaccaaaagtgaatcccaactcagcactcaagaaattccaatcaat |
32549451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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