View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_71 (Length: 281)
Name: NF19382_low_71
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 30221551 - 30221807
Alignment:
| Q |
9 |
tcaaattccacagctgtagtaatgctcaacacaagaaatattgaaggttaccaatcattgaaggaaatgcaaaaaccagagtccaaaagtctttggggaa |
108 |
Q |
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| T |
30221551 |
tcaaattccacagctgtagtaatgctcaacacaagaaatattgaaggttaccaatcattgaaggaaatgcaaaaaccagagtccaaaagtctttggggaa |
30221650 |
T |
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| Q |
109 |
atcaaatttctttcttacaaataccaatacctaagctaacccaatcagaccctcttgagtttgtttggaaagctcgtaagttaatcaaaaggaagagacg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30221651 |
atcaaatttctttcttacaaataccaatacctaagctaagccaatcagaccctcttgagtttgtttggaaagctcgtaagttaatcaaaaggaagagacg |
30221750 |
T |
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| Q |
209 |
ctctttcggtgtttatctcataggtttgctcttgaatttggagatgaaattaaaagg |
265 |
Q |
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| T |
30221751 |
ctctttcggtgtttatctcataggtttgctcttgaatttggagatgaaattaaaagg |
30221807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 30031292 - 30031038
Alignment:
| Q |
10 |
caaattccacagctgtagtaatgctcaacacaagaaatattgaaggttaccaatcattgaaggaaatgcaaaaaccagagtccaaaagtctttggggaaa |
109 |
Q |
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||||||||||||| || ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
30031292 |
caaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccgatcattgatggaaatgcaaaaaccagagtccaaaggtctttggggaaa |
30031193 |
T |
|
| Q |
110 |
tcaaatttctttcttacaaataccaatacctaagctaacccaatcag---------accctcttgagtttgtttggaaagctcgtaagttaatcaaaagg |
200 |
Q |
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| T |
30031192 |
tcaaatttctttcttacaaataccaatacctaaagtaagccaatcagtaatctccaaccctcttgagtttgtttggaattctcgtgaactaatcaagagg |
30031093 |
T |
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| Q |
201 |
aagagacgctctttcggtgtttatctcataggtttgctcttgaatttggagatga |
255 |
Q |
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||||||| |||||| |||||||||| |||| ||||||| || |||||||||||| |
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| T |
30031092 |
aagagacattctttcagtgtttatcttatagctttgctcatggatttggagatga |
30031038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 30227920 - 30227659
Alignment:
| Q |
9 |
tcaaattccacagctgtagtaatgctcaacacaagaaatattgaaggttaccaatcattgaaggaaatgcaaaaaccagagtccaaaagtctttggggaa |
108 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
30227920 |
tcaaattccacagcggtggtaatgctcaacacaagaaatattggaggttaccaatcagtgaaggaaatgcaaaaaccagagtccaaaggtctatggggaa |
30227821 |
T |
|
| Q |
109 |
atcaaatttctttcttacaaataccaatacctaagctaacccaatca---------gaccctcttgagtttgtttggaaagctcgtaagttaatcaaaag |
199 |
Q |
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|| |||||||||||||||||||||| ||||||||| | ||||||| | |||||||||||||||||||| ||||| | ||||||| || |
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| T |
30227820 |
ataaaatttctttcttacaaatacctatacctaagatgtgccaatcaaaaatctccaatcctcttgagtttgtttggaatactcgtgaactaatcaagag |
30227721 |
T |
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| Q |
200 |
gaagagacgctctttcggtgtttatctcataggtttgctcttgaatttggagatgaaattaa |
261 |
Q |
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||||||||| |||||| ||||||||||||||| |||||||||| ||||||| ||||| |||| |
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| T |
30227720 |
gaagagacgttctttcagtgtttatctcatagctttgctcttggatttggaaatgaagttaa |
30227659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 30047563 - 30047303
Alignment:
| Q |
10 |
caaattccacagctgtagtaatgctcaacacaagaaatattgaaggttaccaatcattgaaggaaatgcaaaaaccagagtccaaaagtctttggggaaa |
109 |
Q |
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||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| |
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| T |
30047563 |
caaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccaatcattgacagaaatgcaaaaaccagagtgcaaaggtctttggggaaa |
30047464 |
T |
|
| Q |
110 |
tcaaatttctttcttacaaataccaatacctaagctaacccaatcag---------accctcttgagtttgtttggaaagctcgtaagttaatcaaaagg |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||| | ||| | ||||||| ||| |
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| T |
30047463 |
tcaaatttctttcttacaaataccaatacctaaagtaagtcaatcagtaatctccaatcctcttgagtttgtttggaattcccgtgaactaatcaagagg |
30047364 |
T |
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| Q |
201 |
aagagacgctctttcggtgtttatctcataggtttgctcttgaatttggagatgaaattaa |
261 |
Q |
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|||||||| |||||| |||||||||| ||| | ||||| || |||||||||||| ||||| |
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| T |
30047363 |
aagagacgttctttcagtgtttatcttgtagctatgctcatggatttggagatgagattaa |
30047303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 30061904 - 30061644
Alignment:
| Q |
10 |
caaattccacagctgtagtaatgctcaacacaagaaatattgaaggttaccaatcattgaaggaaatgcaaaaaccagagtccaaaagtctttggggaaa |
109 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| |
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| T |
30061904 |
caaattccacagcagtggtaatgctcaacacaagaaatattggaggttaccaatcattgacagaaatgcaaaaaccagagtgcaaaggtctttggggaaa |
30061805 |
T |
|
| Q |
110 |
tcaaatttctttcttacaaataccaatacctaagctaacccaatcag---------accctcttgagtttgtttggaaagctcgtaagttaatcaaaagg |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||| | ||| | ||||||| ||| |
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| T |
30061804 |
tcaaatttctttcttacaaataccaatacctaaagtaagtcaatcagtaatctccaatcctcttgagtttgtttggaattcccgtgaactaatcaagagg |
30061705 |
T |
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| Q |
201 |
aagagacgctctttcggtgtttatctcataggtttgctcttgaatttggagatgaaattaa |
261 |
Q |
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|||||||| |||||| |||||||||| ||| | ||||| || |||||||||||| ||||| |
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| T |
30061704 |
aagagacgttctttcagtgtttatcttgtagctatgctcatggatttggagatgagattaa |
30061644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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